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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | CFSAN002050_07840 (mltD) | 1312267..1313634 [-], 1368 | 525856663 | membrane protein | |
2 | CFSAN002050_07845 | 1313706..1314461 [-], 756 | 525856664 | hydroxyacylglutathione hydrolase | |
3 | CFSAN002050_07850 | 1314496..1315218 [+], 723 | 525856665 | hypothetical protein | |
4 | CFSAN002050_07855 | 1315215..1315682 [-], 468 | 525856666 | ribonuclease H | |
5 | CFSAN002050_07860 | 1315737..1316477 [+], 741 | 525856667 | DNA polymerase III subunit epsilon | |
6 | CFSAN002050_07870 | 1316810..1316917 [+], 108 | 525859642 | hypothetical protein | |
7 | CFSAN002050_07875 | 1317008..1318063 [-], 1056 | 525856668 | hypothetical protein | TssA |
8 | CFSAN002050_07880 | 1318074..1319069 [-], 996 | 525856669 | SPI-6 associated protein | TssG |
9 | CFSAN002050_07885 | 1319066..1320949 [-], 1884 | 525859643 | type VI secretion protein | TssF |
10 | CFSAN002050_07890 | 1320965..1321459 [-], 495 | 525856670 | cytoplasmic protein | TssE |
11 | CFSAN002050_07895 | 1321456..1322280 [-], 825 | 525856671 | hypothetical protein | TagJ |
12 | CFSAN002050_07900 | 1322267..1323169 [-], 903 | 525856672 | hypothetical protein | |
13 | CFSAN002050_07905 | 1323537..1326176 [+], 2640 | 525856673 | protein disaggregation chaperone | TssH |
14 | CFSAN002050_07910 | 1326276..1326818 [+], 543 | 525856674 | type VI secretion protein | TssB |
15 | CFSAN002050_07915 | 1326842..1328350 [+], 1509 | 525856675 | EvpB family type VI secretion protein | TssC |
16 | CFSAN002050_07920 | 1329236..1329721 [+], 486 | 525856676 | Hcp1 family type VI secretion system effector | TssD |
17 | CFSAN002050_07925 | 1330025..1330510 [+], 486 | 525856677 | hypothetical protein | STM0277 (e) |
18 | CFSAN002050_07930 | 1330495..1330878 [+], 384 | 525856678 | hypothetical protein | STM0278 (i) |
19 | CFSAN002050_07935 | 1331021..1331506 [+], 486 | 525856679 | Hcp1 family type VI secretion system effector | TssD |
20 | CFSAN002050_07940 | 1331573..1332109 [+], 537 | 525856680 | outer membrane lipoprotein | TssJ |
21 | CFSAN002050_07945 | 1332113..1333456 [+], 1344 | 525856681 | type VI secretion protein | TssK |
22 | CFSAN002050_07950 | 1333453..1334757 [+], 1305 | 525856682 | membrane protein | TssL |
23 | CFSAN002050_07955 | 1334762..1335535 [+], 774 | 525859644 | membrane protein | |
24 | CFSAN002050_07960 | 1335726..1336169 [+], 444 | 525856683 | Shiga toxin A subunit | |
25 | CFSAN002050_07965 | 1336203..1340072 [+], 3870 | 525856684 | membrane protein | TssM |
26 | CFSAN002050_07970 | 1340072..1340839 [+], 768 | 525856685 | hypothetical protein | |
27 | CFSAN002050_07975 | 1340882..1341352 [+], 471 | 525859645 | hypothetical protein | |
28 | CFSAN002050_07980 | 1341985..1342716 [+], 732 | 525859646 | hypothetical protein | |
29 | CFSAN002050_07985 | 1342806..1343147 [+], 342 | 525859647 | hypothetical protein | |
30 | CFSAN002050_07990 | 1344179..1346398 [+], 2220 | 525856686 | type VI secretion protein Vgr | TssI |
31 | CFSAN002050_07995 | 1346429..1346860 [+], 432 | 525859648 | hypothetical protein | |
32 | CFSAN002050_08000 | 1346891..1351390 [+], 4500 | 525859649 | sugar-binding protein | PAAR |
33 | CFSAN002050_08005 | 1351380..1351814 [+], 435 | 525859650 | hypothetical protein | |
34 | CFSAN002050_08010 | 1352348..1352494 [+], 147 | 525859651 | hypothetical protein | |
35 | CFSAN002050_08015 | 1352585..1352971 [+], 387 | 525859652 | hypothetical protein | |
36 | CFSAN002050_08020 | 1353278..1353400 [+], 123 | 525859653 | hypothetical protein | |
37 | CFSAN002050_08025 | 1353427..1353813 [+], 387 | 525859654 | hypothetical protein | |
38 | CFSAN002050_08030 | 1353840..1354358 [+], 519 | 525859655 | SPI-6 associated protein | |
39 | CFSAN002050_08035 | 1354756..1356990 [+], 2235 | 525856687 | type VI secretion protein Vgr | TssI |
40 | CFSAN002050_08040 | 1357050..1357508 [+], 459 | 525859656 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein