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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SE451236_07320 (mltD) | 1588357..1589724 [-], 1368 | 526219197 | membrane protein | |
2 | SE451236_07325 | 1589796..1590551 [-], 756 | 526219198 | hydroxyacylglutathione hydrolase | |
3 | SE451236_07330 | 1590586..1591308 [+], 723 | 526219199 | hypothetical protein | |
4 | SE451236_07335 | 1591305..1591772 [-], 468 | 526219200 | ribonuclease H | |
5 | SE451236_07340 | 1591827..1592567 [+], 741 | 526219201 | DNA polymerase III subunit epsilon | |
6 | SE451236_07350 | 1593099..1594154 [-], 1056 | 526219202 | hypothetical protein | TssA |
7 | SE451236_07355 | 1594165..1595160 [-], 996 | 526219203 | SPI-6 associated protein | TssG |
8 | SE451236_07360 | 1595157..1597040 [-], 1884 | 526221961 | type VI secretion protein | TssF |
9 | SE451236_07365 | 1597056..1597550 [-], 495 | 526219204 | cytoplasmic protein | TssE |
10 | SE451236_07370 | 1597547..1598371 [-], 825 | 526219205 | hypothetical protein | TagJ |
11 | SE451236_07375 | 1598358..1599260 [-], 903 | 526219206 | hypothetical protein | |
12 | SE451236_07380 | 1599628..1602267 [+], 2640 | 526219207 | protein disaggregation chaperone | TssH |
13 | SE451236_07385 | 1602367..1602909 [+], 543 | 526219208 | type VI secretion protein | TssB |
14 | SE451236_07390 | 1602933..1604426 [+], 1494 | 526219209 | EvpB family type VI secretion protein | TssC |
15 | SE451236_07395 | 1605312..1605797 [+], 486 | 526219210 | Hcp1 family type VI secretion system effector | TssD |
16 | SE451236_07400 | 1606102..1606587 [+], 486 | 526219211 | hypothetical protein | STM0277 (e) |
17 | SE451236_07405 | 1606572..1606955 [+], 384 | 526219212 | hypothetical protein | STM0278 (i) |
18 | SE451236_07410 | 1607098..1607583 [+], 486 | 526219213 | Hcp1 family type VI secretion system effector | TssD |
19 | SE451236_07415 | 1607650..1608186 [+], 537 | 526219214 | outer membrane lipoprotein | TssJ |
20 | SE451236_07420 | 1608190..1609533 [+], 1344 | 526219215 | type VI secretion protein | TssK |
21 | SE451236_07425 | 1609530..1610834 [+], 1305 | 526219216 | membrane protein | TssL |
22 | SE451236_07430 | 1610839..1611612 [+], 774 | 526221962 | membrane protein | |
23 | SE451236_07435 | 1611803..1612246 [+], 444 | 526219217 | Shiga toxin A subunit | |
24 | SE451236_07440 | 1612280..1616149 [+], 3870 | 526219218 | membrane protein | TssM |
25 | SE451236_07445 | 1616149..1616937 [+], 789 | 526219219 | hypothetical protein | |
26 | SE451236_07450 | 1616964..1617350 [+], 387 | 526221963 | hypothetical protein | |
27 | SE451236_07455 | 1617377..1617895 [+], 519 | 526221964 | SPI-6 associated protein | |
28 | SE451236_07460 | 1618292..1620481 [+], 2190 | 526219220 | type VI secretion protein Vgr | TssI |
29 | SE451236_07465 | 1620505..1620951 [+], 447 | 526219221 | hypothetical protein | |
30 | SE451236_07470 | 1620970..1625064 [+], 4095 | 526221965 | type IV secretion protein Rhs | PAAR |
31 | SE451236_07475 | 1625058..1625321 [+], 264 | 526221966 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein