I. Summary
SecReT6 ID828 insolico
StrainSalmonella bongori N268-08
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A464_14201410747..1411796 [-], 1050526227373Alcohol dehydrogenase 
2A464_14211412884..1413843 [-], 960526227374hypothetical protein 
3A464_14221414016..1414744 [-], 729526227375Transcriptional regulator MerR familyassociated with photolyase 
4A464_14231414802..1415176 [-], 375526227376hypothetical protein 
5A464_14241415188..1416111 [-], 924526227377Uncharacterized protein ImpA  TssA
6A464_14251416125..1419664 [-], 3540526227378IcmF-related protein  TssM
7A464_14261419661..1420407 [-], 747526227379Inner membrane protein DotU  TssL
8A464_14271420397..1421683 [-], 1287526227380Uncharacterized protein ImpJ/VasE  TssK
9A464_14281421730..1422200 [-], 471526227381hypothetical protein 
10A464_14291422531..1423082 [+], 552526227382Uncharacterized protein ImpB  TssB
11A464_14301423103..1424584 [+], 1482526227383Uncharacterized protein ImpC  TssC
12A464_14311424603..1425079 [+], 477526227384Putative cytoplasmic protein USSDB7A  TssD
13A464_14321425092..1425469 [+], 378526227385putative cytoplasmic protein  TssE
14A464_14331425488..1427209 [+], 1722526227386Protein ImpG/VasA  TssF
15A464_14341427173..1428111 [+], 939526227387Uncharacterized protein ImpH/VasB  TssG
16A464_14351428102..1430615 [+], 2514526227388ClpB protein  TssH
17A464_14361430639..1431655 [+], 1017526227389hypothetical protein 
18A464_14371431825..1433789 [+], 1965526227390VgrG protein  TssI
19A464_14381433789..1434310 [+], 522526227391Phophatidylinositol-4-phosphate 5- kinase 
20A464_14391434711..1436084 [-], 1374526227392Multidrug and toxin extrusion (MATE) familyefflux pump YdhE/NorM 
21A464_14401436301..1436942 [+], 642526227393Riboflavin synthase eubacterial/eukaryotic 
22A464_14411436986..1438134 [-], 1149526227394Cyclopropane-fatty-acyl-phospholipid synthase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
ROD_34191 , STY2606

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A464_14311424603..1425079 [+], 477526227384Putative cytoplasmic protein USSDB7A ROD_34191
2A464_24892469996..2470313 [+], 318526228441Putative cytoplasmic protein STY2606

Download FASTA format files
Proteins        Genes