I. Summary

SecReT6 ID	829
Strain	Burkholderia pseudomallei MSHR305
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_021877
Location	266566..292886
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BDL_3739	262287..262976 [-], 690	526458657	CDP-alcohol phosphatidyltransferase family protein
2	BDL_3740	263342..264856 [+], 1515	526458604	succinate CoA transferase family protein
3	BDL_3741	264953..265585 [+], 633	526457782	hypothetical protein
4	BDL_3742	266566..267504 [+], 939	526456945	hypothetical protein	TssA
5	BDL_3743	267538..268086 [+], 549	526457846	hypothetical protein	TssB
6	BDL_3744	268083..269594 [+], 1512	526458114	hypothetical protein	TssC
7	BDL_3745	269738..270265 [+], 528	526459131	hypothetical protein	TssD
8	BDL_3746	270345..270776 [+], 432	526458798	lysozyme family protein	TssE
9	BDL_3747	270790..272652 [+], 1863	526457193	hypothetical protein	TssF
10	BDL_3748	272649..273638 [+], 990	526457256	hypothetical protein	TssG
11	BDL_3749 (clpV)	273641..276511 [+], 2871	526457442	type VI secretion ATPase, ClpV1 family	TssH
12	BDL_3750	276502..278793 [+], 2292	526459208	Rhs element Vgr family protein	TssI
13	BDL_3751	278959..281247 [+], 2289	526459109	Rhs element Vgr family protein	TssI
14	BDL_3752	281251..283467 [+], 2217	526457961	pentapeptide repeats family protein
15	BDL_3753	283467..284537 [+], 1071	526458150	pentapeptide repeats family protein
16	BDL_3754	284540..285256 [+], 717	526456774	hypothetical protein
17	BDL_3755	285326..285688 [+], 363	526458968	hypothetical protein
18	BDL_3756	285706..286287 [+], 582	526458598	type VI secretion lipofamily protein	TssJ
19	BDL_3757	286284..287645 [+], 1362	526458074	hypothetical protein	TssK
20	BDL_3758	287671..289386 [+], 1716	526458107	type IV/VI secretion system , DotU family domain protein	TssL
21	BDL_3759	289383..292886 [+], 3504	526459190	intracellular multiplication and macrophage-killing family protein	TssM
22	BDL_3760	292945..293304 [+], 360	526458474	hypothetical protein
23	BDL_3761	293459..293752 [+], 294	526457361	hypothetical protein
24	BDL_3762	293977..294348 [+], 372	526459058	hypothetical protein
25	BDL_3763	294899..295798 [+], 900	526458163	alpha/beta hydrolase family protein
26	BDL_3764	296020..297339 [+], 1320	526459316	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A