 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | XOO3459 | 3698383..3698691 [-], 309 | 58583082 | hypothetical protein | |
2 | XOO3460 | 3698698..3699039 [-], 342 | 58583083 | hypothetical protein | |
3 | XOO3461 (hsdR) | 3699193..3702765 [+], 3573 | 58583084 | type I restriction enzyme EcoKI subunit R | |
4 | XOO3462 | 3702677..3703903 [+], 1227 | 58583085 | abortive infection bacteriophage resistance protein | |
5 | XOO3463 (hsdM-2) | 3703950..3705494 [+], 1545 | 58583086 | type I restriction-modification system, M subunit | |
6 | XOO3464 | 3705472..3706866 [+], 1395 | 58583087 | Type I restriction enzyme StySPI specificity protein | |
7 | XOO3465 | 3706900..3707208 [-], 309 | 58583088 | hypothetical protein | |
8 | YXOOp02 | 3707215..3707478 [-], 264 | 121632114 | hypothetical protein | |
9 | XOO3466 | 3708207..3708962 [+], 756 | 58583089 | hypothetical protein | TssI |
10 | XOO3467 | 3709256..3710278 [-], 1023 | 58583090 | hypothetical protein | |
11 | XOO3468 | 3710288..3713155 [-], 2868 | 58583091 | hypothetical protein | |
12 | XOO3472 | 3716033..3718045 [-], 2013 | 58583095 | hypothetical protein | |
13 | XOO4882 | 3719245..3720123 [-], 879 | 121632115 | hypothetical protein | |
14 | XOO3473 | 3720130..3721191 [-], 1062 | 122879263 | hypothetical protein | |
15 | XOO3474 | 3721305..3722894 [-], 1590 | 58583097 | hypothetical protein | TssI |
16 | YXOOp03 | 3722987..3723340 [-], 354 | 121632116 | hypothetical protein | |
17 | XOO3475 (clpB) | 3723371..3726100 [-], 2730 | 58583098 | chaperone ClpB | TssH |
18 | XOO3476 | 3726186..3727277 [-], 1092 | 58583099 | hypothetical protein | TssG |
19 | XOO3477 | 3727241..3729076 [-], 1836 | 58583100 | hypothetical protein | TssF |
20 | XOO3478 | 3729079..3729567 [-], 489 | 58583101 | hypothetical protein | TssE |
21 | XOO3479 (hcp) | 3729715..3730212 [-], 498 | 58583102 | hypothetical protein | TssD |
22 | XOO3480 | 3730354..3731850 [-], 1497 | 58583103 | hypothetical protein | TssC |
23 | XOO3481 | 3731854..3732354 [-], 501 | 58583104 | hypothetical protein | TssB |
24 | XOO3482 | 3732401..3733015 [-], 615 | 58583105 | hypothetical protein | |
25 | XOO3483 | 3733231..3733884 [+], 654 | 58583106 | transmembrane protein | TssJ |
26 | XOO3484 | 3734036..3735370 [+], 1335 | 122879264 | hypothetical protein | TssK |
27 | XOO3485 | 3735367..3736158 [+], 792 | 58583108 | hypothetical protein | TssL |
28 | XOO3486 | 3736169..3738706 [+], 2538 | 58583109 | hypothetical protein | TssI |
29 | XOO3487 | 3738731..3741625 [+], 2895 | 58583110 | EF hand domain-containing protein | |
30 | XOO3488 | 3742460..3743893 [+], 1434 | 58583111 | hypothetical protein | TssI |
31 | XOO3489 | 3743897..3746152 [+], 2256 | 58583112 | hypothetical protein | |
32 | XOO3490 | 3746714..3748975 [+], 2262 | 58583113 | hypothetical protein | TssI |
33 | XOO3491 | 3751166..3752389 [+], 1224 | 58583114 | ISxac1 transposase | |
34 | XOO3492 | 3752416..3752955 [+], 540 | 58583115 | hypothetical protein | |
35 | XOO4885 | 3753076..3753369 [+], 294 | 121632117 | hypothetical protein | |
36 | YXOOp04 | 3754099..3754446 [+], 348 | 121632118 | hypothetical protein | |
37 | XOO3493 | 3754541..3755431 [+], 891 | 58583116 | hypothetical protein | TssK |
38 | XOO3494 | 3755428..3756219 [+], 792 | 58583117 | hypothetical protein | TssL |
39 | XOO3495 | 3756230..3757396 [+], 1167 | 58583118 | hypothetical protein | TssI |
40 | XOO3498 | 3758605..3758994 [-], 390 | 58583121 | VGR-related protein | |
41 | XOO3499 | 3758975..3761257 [-], 2283 | 58583122 | hypothetical protein | |
42 | XOO3500 | 3761206..3761802 [-], 597 | 58583123 | hypothetical protein | |
43 | XOO3501 | 3761795..3762670 [-], 876 | 58583124 | hypothetical protein | |
44 | XOO3503 | 3763083..3764609 [-], 1527 | 58583126 | VGR-related protein | TssI |
45 | XOO3504 | 3764610..3765293 [-], 684 | 58583127 | hypothetical protein | TssI |
46 | XOO3505 | 3765389..3766435 [+], 1047 | 58583128 | sulfatase modifying factor 1 (C-alpha-formyglycine-generating enzyme 1) | |
47 | XOO3506 | 3766489..3769554 [-], 3066 | 58583129 | DNA repair ATPase | |
48 | XOO3507 | 3769541..3770086 [-], 546 | 58583130 | hypothetical protein | |
49 | XOO3508 | 3770168..3772000 [-], 1833 | 58583131 | hypothetical protein | |
50 | XOO4887 | 3771997..3772254 [-], 258 | 121632119 | hypothetical protein | |
51 | XOO3509 | 3772500..3772964 [-], 465 | 122879265 | hypothetical protein | |
52 | XOO4888 | 3773281..3773538 [-], 258 | 121632120 | hypothetical protein | |
53 | YXOOp05 | 3773582..3773764 [-], 183 | 121632121 | hypothetical protein | |
54 | XOO3510 | 3773785..3774249 [-], 465 | 58583133 | hypothetical protein | |
55 | XOO3511 | 3774246..3775199 [-], 954 | 58583134 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein