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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BDL_5552 | 2562440..2563267 [-], 828 | 526457173 | integrase core domain protein | |
2 | BDL_5553 | 2563290..2565065 [-], 1776 | 526456986 | integrase core domain protein | |
3 | BDL_5554 | 2565151..2565819 [-], 669 | 526457171 | hypothetical protein | |
4 | BDL_5555 | 2565877..2568081 [-], 2205 | 526457575 | Rhs element Vgr family protein | TssI |
5 | BDL_5556 (clpV) | 2568078..2570744 [-], 2667 | 526458222 | type VI secretion ATPase, ClpV1 family | TssH |
6 | BDL_5557 | 2570723..2572201 [-], 1479 | 526458164 | hypothetical protein | TssG |
7 | BDL_5558 | 2572198..2574069 [-], 1872 | 526457373 | hypothetical protein | TssF |
8 | BDL_5559 | 2574074..2574634 [-], 561 | 526457275 | lysozyme family protein | TssE |
9 | BDL_5560 (hcp1) | 2574653..2575144 [-], 492 | 526458984 | protein hcp1 | TssD |
10 | BDL_5561 | 2575204..2576712 [-], 1509 | 526458140 | hypothetical protein | TssC |
11 | BDL_5562 | 2576705..2577283 [-], 579 | 526457197 | hypothetical protein | TssB |
12 | BDL_5563 | 2577346..2578425 [-], 1080 | 526459197 | hypothetical protein | TssA |
13 | BDL_5564 | 2578478..2581072 [-], 2595 | 526457208 | tyrosine kinase family protein | |
14 | BDL_5565 | 2581283..2582197 [-], 915 | 526458678 | hypothetical protein | |
15 | BDL_5566 | 2582194..2585823 [-], 3630 | 526459242 | intracellular multiplication and macrophage-killing family protein | TssM |
16 | BDL_5567 | 2585826..2587142 [-], 1317 | 526458428 | type VI secretion system OmpA/MotB family protein | TssL |
17 | BDL_5568 | 2587158..2588561 [-], 1404 | 526459023 | hypothetical protein | TssK |
18 | BDL_5569 | 2588558..2589076 [-], 519 | 526458019 | type VI secretion lipofamily protein | TssJ |
19 | BDL_5570 | 2589716..2590117 [+], 402 | 526458337 | hypothetical protein | |
20 | BDL_5571 | 2590172..2591608 [+], 1437 | 526458648 | FHA domain protein | Fha |
21 | BDL_5572 | 2591651..2593417 [-], 1767 | 526457364 | transglutaminase-like superfamily protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein