I. Summary

SecReT6 ID	831
Strain	Burkholderia pseudomallei MSHR305
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_021877
Location	2565877..2589076
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BDL_5552	2562440..2563267 [-], 828	526457173	integrase core domain protein
2	BDL_5553	2563290..2565065 [-], 1776	526456986	integrase core domain protein
3	BDL_5554	2565151..2565819 [-], 669	526457171	hypothetical protein
4	BDL_5555	2565877..2568081 [-], 2205	526457575	Rhs element Vgr family protein	TssI
5	BDL_5556 (clpV)	2568078..2570744 [-], 2667	526458222	type VI secretion ATPase, ClpV1 family	TssH
6	BDL_5557	2570723..2572201 [-], 1479	526458164	hypothetical protein	TssG
7	BDL_5558	2572198..2574069 [-], 1872	526457373	hypothetical protein	TssF
8	BDL_5559	2574074..2574634 [-], 561	526457275	lysozyme family protein	TssE
9	BDL_5560 (hcp1)	2574653..2575144 [-], 492	526458984	protein hcp1	TssD
10	BDL_5561	2575204..2576712 [-], 1509	526458140	hypothetical protein	TssC
11	BDL_5562	2576705..2577283 [-], 579	526457197	hypothetical protein	TssB
12	BDL_5563	2577346..2578425 [-], 1080	526459197	hypothetical protein	TssA
13	BDL_5564	2578478..2581072 [-], 2595	526457208	tyrosine kinase family protein
14	BDL_5565	2581283..2582197 [-], 915	526458678	hypothetical protein
15	BDL_5566	2582194..2585823 [-], 3630	526459242	intracellular multiplication and macrophage-killing family protein	TssM
16	BDL_5567	2585826..2587142 [-], 1317	526458428	type VI secretion system OmpA/MotB family protein	TssL
17	BDL_5568	2587158..2588561 [-], 1404	526459023	hypothetical protein	TssK
18	BDL_5569	2588558..2589076 [-], 519	526458019	type VI secretion lipofamily protein	TssJ
19	BDL_5570	2589716..2590117 [+], 402	526458337	hypothetical protein
20	BDL_5571	2590172..2591608 [+], 1437	526458648	FHA domain protein	Fha
21	BDL_5572	2591651..2593417 [-], 1767	526457364	transglutaminase-like superfamily protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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