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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BDL_5908 | 2993261..2993713 [-], 453 | 526456905 | acetyltransferase domain protein | |
2 | BDL_5909 | 2994532..2995092 [+], 561 | 526458173 | binding--dependent transport system inner membrane component family protein | |
3 | BDL_5910 | 2995079..2995933 [+], 855 | 526457763 | binding--dependent transport system inner membrane component family protein | |
4 | BDL_5911 | 2995930..2996961 [+], 1032 | 526457359 | bacterial extracellular solute-binding family protein | |
5 | BDL_5912 | 2998229..3001021 [+], 2793 | 526459071 | Rhs element Vgr family protein | TssI |
6 | BDL_5913 | 3001035..3003275 [+], 2241 | 526457937 | hypothetical protein | BTH_I3226 (e) |
7 | BDL_5914 | 3003564..3004952 [+], 1389 | 526459384 | hypothetical protein | |
8 | BDL_5915 | 3004962..3005225 [+], 264 | 526457626 | PAAR motif family protein | PAAR |
9 | BDL_5916 | 3005640..3006059 [-], 420 | 526458752 | hypothetical protein | |
10 | BDL_5917 | 3006079..3006405 [-], 327 | 526458722 | thioredoxin family protein | |
11 | BDL_5918 | 3006878..3007570 [+], 693 | 526459385 | putative lipoprotein | |
12 | BDL_5919 | 3008156..3008881 [-], 726 | 526457342 | hypothetical protein | |
13 | BDL_5920 (ctaD) | 3008878..3010473 [-], 1596 | 526458705 | cytochrome c oxidase, subunit I | |
14 | BDL_5921 | 3010878..3011348 [+], 471 | 526458148 | hypothetical protein | |
15 | BDL_5922 | 3011614..3013080 [-], 1467 | 526458526 | hypothetical protein | |
16 | BDL_5923 | 3013440..3013904 [+], 465 | 526458974 | hypothetical protein | |
17 | BDL_5924 | 3015491..3016402 [+], 912 | 526458125 | coiled stalk of trimeric autotransporter adhesin family protein | |
18 | BDL_5925 | 3016469..3017920 [-], 1452 | 526457349 | phoPQ-activated pathogenicity-related family protein | |
19 | BDL_5926 | 3018180..3018578 [-], 399 | 526457037 | yfaZ family protein | |
20 | BDL_5927 | 3019359..3019904 [+], 546 | 526458764 | fimbrial family protein | |
21 | BDL_5928 | 3019969..3020706 [+], 738 | 526458744 | hypothetical protein | |
22 | BDL_5929 | 3021047..3023563 [+], 2517 | 526459203 | hypothetical protein | |
23 | BDL_5930 | 3023556..3024128 [+], 573 | 526458342 | fimbrial family protein | |
24 | BDL_5931 | 3024160..3024849 [+], 690 | 526458871 | hypothetical protein | TssL |
25 | BDL_5932 | 3024852..3026528 [+], 1677 | 526458508 | ompA family protein | TagL |
26 | BDL_5933 | 3026918..3027457 [+], 540 | 526457513 | hypothetical protein | TssB |
27 | BDL_5934 | 3027491..3028990 [+], 1500 | 526457389 | hypothetical protein | TssC |
28 | BDL_5935 (hcp1) | 3029190..3029672 [+], 483 | 526457230 | protein hcp1 | TssD |
29 | BDL_5936 | 3029869..3030342 [+], 474 | 526457553 | type VI secretion lipofamily protein | TssJ |
30 | BDL_5937 | 3030348..3031697 [+], 1350 | 526458771 | hypothetical protein | TssK |
31 | BDL_5938 | 3031694..3032995 [+], 1302 | 526458912 | type VI secretion system OmpA/MotB family protein | TssL |
32 | BDL_5939 | 3033010..3036918 [+], 3909 | 526457684 | intracellular multiplication and macrophage-killing family protein | TssM |
33 | BDL_5940 | 3037108..3037677 [+], 570 | 526459129 | hypothetical protein | |
34 | BDL_5941 | 3037775..3040528 [+], 2754 | 526456866 | Rhs element Vgr family protein | TssI |
35 | BDL_5942 | 3040536..3040727 [+], 192 | 526457557 | PAAR motif family protein | PAAR |
36 | BDL_5944 | 3040740..3044192 [+], 3453 | 526458632 | RHS repeat-associated core domain protein | |
37 | BDL_5943 | 3044085..3045443 [-], 1359 | 526457158 | glycosyltransferase family protein | |
38 | BDL_5945 | 3045476..3046504 [-], 1029 | 526458411 | fimbrial family protein | |
39 | BDL_5946 | 3046559..3047629 [-], 1071 | 526456964 | hypothetical protein | TssA |
40 | BDL_5947 | 3047648..3048697 [-], 1050 | 526457756 | hypothetical protein | TssG |
41 | BDL_5948 | 3048694..3050574 [-], 1881 | 526457750 | hypothetical protein | TssF |
42 | BDL_5949 | 3050576..3051094 [-], 519 | 526457039 | lysozyme family protein | TssE |
43 | BDL_5950 | 3051081..3051887 [-], 807 | 526457043 | impE family protein | TagJ |
44 | BDL_5951 | 3051919..3052971 [-], 1053 | 526459283 | hypothetical protein | |
45 | BDL_5952 (clpV) | 3053401..3056046 [+], 2646 | 526458755 | type VI secretion ATPase, ClpV1 family | TssH |
46 | BDL_5953 | 3056437..3059481 [-], 3045 | 526458420 | response regulator | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein