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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SN31241_12510 | 1288519..1289739 [-], 1221 | 528817965 | Membrane-bound lytic murein transglycosylase D | |
2 | SN31241_12520 | 1289958..1290713 [-], 756 | 528817966 | Hydroxyacylglutathione hydrolase | |
3 | SN31241_12530 | 1290802..1291470 [+], 669 | 528817967 | protein yafS | |
4 | SN31241_12540 | 1291467..1291934 [-], 468 | 528817968 | Ribonuclease H | |
5 | SN31241_12550 | 1291989..1292729 [+], 741 | 528817969 | DNA polymerase III subunit epsilon | |
6 | SN31241_12560 | 1293261..1294316 [-], 1056 | 528817970 | ImpA N | TssA |
7 | SN31241_12570 | 1294327..1295322 [-], 996 | 528817971 | Type VI secretion protein | TssG |
8 | SN31241_12580 | 1295319..1297202 [-], 1884 | 528817972 | Type VI secretion protein | TssF |
9 | SN31241_12590 | 1297218..1297712 [-], 495 | 528817973 | Type VI secretion system lysozyme-like protein | TssE |
10 | SN31241_12600 | 1297709..1298533 [-], 825 | 528817974 | SciE protein | TagJ |
11 | SN31241_12610 | 1298520..1299410 [-], 891 | 528817975 | cytoplasmic protein | |
12 | SN31241_12620 | 1299790..1302429 [+], 2640 | 528817976 | Chaperone protein ClpB | TssH |
13 | SN31241_12630 | 1302529..1303071 [+], 543 | 528817977 | Type VI secretion protein | TssB |
14 | SN31241_12640 | 1303095..1304603 [+], 1509 | 528817978 | Type VI secretion protein, EvpB | TssC |
15 | SN31241_12650 | 1305029..1305454 [+], 426 | 528817979 | hypothetical protein | STY0301 (i) |
16 | SN31241_12660 | 1305691..1306176 [+], 486 | 528817980 | Hemolysin-coregulated protein | TssD |
17 | SN31241_12670 | 1306524..1306964 [+], 441 | 528817981 | cytoplasmic protein | STM0277 (e) |
18 | SN31241_12680 | 1307000..1307332 [+], 333 | 528817982 | periplasmic protein | STM0278 (i) |
19 | SN31241_12690 | 1307475..1307960 [+], 486 | 528817983 | Hemolysin-coregulated protein | TssD |
20 | SN31241_12700 | 1308072..1308563 [+], 492 | 528817984 | Type VI secretion lipoprotein | TssJ |
21 | SN31241_12710 | 1308567..1309910 [+], 1344 | 528817985 | Type VI secretion protein | TssK |
22 | SN31241_12720 | 1309907..1311211 [+], 1305 | 528817986 | SciP protein | TssL |
23 | SN31241_12730 | 1311216..1311989 [+], 774 | 528817987 | inner membrane protein | |
24 | SN31241_12740 | 1312266..1312622 [+], 357 | 528817988 | SciR protein | |
25 | SN31241_12750 | 1312656..1316525 [+], 3870 | 528817989 | Type VI secretion protein IcmF | TssM |
26 | SN31241_12760 | 1316540..1317292 [+], 753 | 528817990 | cytoplasmic protein | |
27 | SN31241_12770 | 1317850..1318251 [+], 402 | 528817991 | hypothetical protein | |
28 | SN31241_12780 | 1318260..1318382 [+], 123 | 528817992 | cytoplasmic protein | |
29 | SN31241_12790 | 1318379..1318795 [+], 417 | 528817993 | secreted protein | |
30 | SN31241_12800 | 1319218..1319340 [+], 123 | 528817994 | cytoplasmic protein | |
31 | SN31241_12810 | 1319482..1319691 [+], 210 | 528817995 | hypothetical protein | |
32 | SN31241_12820 | 1319737..1321926 [+], 2190 | 528817996 | Rhs element Vgr | TssI |
33 | SN31241_12830 | 1321950..1322396 [+], 447 | 528817997 | hypothetical protein | |
34 | SN31241_12840 | 1322415..1326494 [+], 4080 | 528817998 | hypothetical protein | PAAR |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein