SecReT6
I. Summary
SecReT6 ID837 insolico
StrainSalmonella enterica subsp. enterica serovar Pullorum str. S06004
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021984
Location1852321..1875369
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121211
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1I137_086051847386..1847790 [-], 405529222300hypothetical protein 
2I137_086101847783..1852219 [-], 4437529222301hypothetical protein  PAAR
3I137_086151852321..1854432 [-], 2112529222302type IV secretion protein Rhs  TssI
4I137_086201854654..1855172 [-], 519529222303hypothetical protein  TssD
5I137_086251855570..1855743 [-], 174529222304hypothetical protein 
6I137_086301855800..1856303 [+], 504529222305hypothetical protein  TssB
7I137_086351856333..1856545 [+], 213529222306hypothetical protein  TssC
8I137_086401856594..1858066 [+], 1473529220039EvpB family type VI secretion protein  TssC
9I137_086451858063..1858479 [+], 417529222307type VI secretion protein  TssE
10I137_086501858484..1860289 [+], 1806529222308type VI secretion protein  TssF
11I137_086551860295..1861389 [+], 1095529222309type VI secretion protein  TssG
12I137_086601861414..1862700 [+], 1287529222310type VI secretion system protein ImpI  Fha
13I137_086651862697..1863230 [+], 534529222311hypothetical protein  TssJ
14I137_086701863233..1864564 [+], 1332529222312hypothetical protein  TssK
15I137_086751864637..1865293 [+], 657530331575membrane protein  TssL
16I137_086801865306..1867879 [+], 2574529220040protein disaggregation chaperone  TssH
17I137_086851868713..1869525 [+], 813529222314hypothetical protein  TssA
18I137_086901869604..1870008 [+], 405529222315hypothetical protein  TssA
19I137_086951874353..1874523 [+], 171529222316hypothetical protein 
20I137_087001874890..1875369 [+], 480529222317Hcp  TssD
21I137_087051875402..1876274 [+], 873529222318DNA-binding protein 
22I137_087101876294..1876443 [+], 150529222319hypothetical protein 
23I137_087151876459..1876566 [+], 108529222320hypothetical protein 
24I137_087201876778..1877113 [+], 336529222321hypothetical protein 
25I137_087251877110..1877244 [+], 135529222322hypothetical protein 
26I137_087301877237..1877695 [+], 459529222323hypothetical protein 
27I137_087351878296..1878514 [-], 219529222324hypothetical protein 
28I137_087401878545..1878838 [+], 294529222325hypothetical protein 
29I137_087451879005..1880108 [-], 1104529222326oxidoreductase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_34191 , STY2606, idrA

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1I137_149853189934..3190419 [-], 486529220957hypothetical protein ROD_34191
2I137_02340562686..563054 [-], 369529222029hypothetical protein STY2606
3I137_086201854654..1855172 [-], 519529222303hypothetical protein idrA

Download FASTA format files
Proteins        Genes

Homology Immunity protein list
STY2607

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1I137_02335562168..562686 [-], 519529219139hypothetical protein STY2607

Download FASTA format files
Proteins        Genes
N/A