I. Summary
SecReT6 ID84 insolico
StrainVibrio fischeri ES114
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VF_09871085721..1087673 [+], 195359711594methyl-accepting chemotaxis protein 
2VF_09881088147..1088896 [+], 75059711595hypothetical protein 
3VF_0989 (mifA)1089083..1090978 [+], 189659711596diguanylate cyclase (GGDEF), inhibitor of flagellar motility 
4VF_09901090979..1091938 [-], 96059711597serine/threonine protein kinase 
5VF_09911091935..1092606 [-], 67259711598protein phosphatase 2C 
6VF_0993 (icmF)1092603..1096124 [-], 3522172087682secretion protein IcmF  TssM
7VF_09941096135..1096968 [-], 83459711601OmpA family protein  TssL
8VF_09951096970..1098292 [-], 132359711602hypothetical protein  TssK
9VF_09961098304..1098795 [-], 49259711603lipoprotein  TssJ
10VF_09971098832..1100142 [-], 131159711604phospho-specific protein-protein interaction motif-containing protein  Fha
11VF_26001100146..1100274 [-], 129172087683hypothetical protein 
12VF_09981100277..1101845 [-], 156959711605transcriptional regulator 
13VF_09991101851..1104433 [-], 258359711606ATP-dependent protease subunit  TssH
14VF_10001104430..1105470 [-], 104159711607quinoprotein dehydrogenase  TssG
15VF_10011105434..1107185 [-], 175259711608hypothetical protein  TssF
16VF_10021107182..1107607 [-], 42659711609hypothetical protein  TssE
17VF_10031107697..1109172 [-], 147659711610hypothetical protein  TssC
18VF_10041109176..1109676 [-], 50159711611cytoplasmic protein  TssB
19VF_10051109692..1111242 [-], 155159711612hypothetical protein 
20VF_10061111465..1111671 [-], 20759711613hypothetical protein 
21VF_10071111664..1112215 [-], 55259711614primosomal replication protein N' 
22VF_1008 (yfcA)1112226..1112996 [-], 77159711615hypothetical protein 
23VF_1009 (dinG)1113065..1115149 [-], 208559711616ATP-dependent DNA helicase DinG 
24VF_10101115586..1116692 [+], 110759711617hypothetical protein 
25VF_10111117330..1118388 [+], 105959711618hypothetical protein 
26VF_2601 (hisL)1118585..1118632 [+], 48172087684his operon leader peptide 
27VF_1012 (hisG)1118853..1119749 [+], 89759711619ATP phosphoribosyltransferase 
28VF_1013 (hisD)1119755..1121074 [+], 132059711620histidinol dehydrogenase 
29VF_1014 (hisC)1121084..1122124 [+], 104159711621histidinol-phosphate aminotransferase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VF_A09541073259..1073777 [-], 51959714137hemolysin co-regulated protein PSPTO_5435

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Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation