SecReT6
I. Summary
SecReT6 ID840 insolico
StrainKlebsiella pneumoniae JM45
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022082
Location2052004..2081796
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110011
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1N559_19932047290..2048099 [+], 810530629732molybdate ABC transporter periplasmic substrate-binding protein 
2N559_19942048074..2048973 [-], 900530629733LysR family transcriptional regulator 
3N559_19952049083..2049565 [-], 483530629734cold shock protein E 
4N559_19972050480..2051019 [-], 540530629735putative nucleoprotein/polynucleotide-associated enzyme 
5N559_19982051134..2051463 [-], 330530629736hypothetical protein 
6N559_19992051632..2051793 [+], 162530629737hypothetical protein 
7N559_20002052004..2053371 [+], 1368530629738hypothetical protein  TssK
8N559_20012053368..2054021 [+], 654530629739type VI secretion system protein ImpK  TssL
9N559_20022054025..2055722 [+], 1698530629740hypothetical protein  TagL
10N559_20032055840..2056001 [+], 162530629741hypothetical protein 
11N559_20042056558..2058666 [+], 2109530629742hypothetical protein  TssI
12N559_20052058690..2060045 [+], 1356530629743hypothetical protein 
13N559_20062060175..2060555 [+], 381530629744hypothetical protein 
14N559_20072060552..2061058 [+], 507530629745hypothetical protein 
15N559_20082061135..2061305 [+], 171530629746hypothetical protein 
16N559_20092061424..2061804 [+], 381530629747hypothetical protein 
17N559_20102062070..2063452 [+], 1383530629748hypothetical protein 
18N559_20112063582..2063962 [+], 381530629749hypothetical protein 
19N559_20122063959..2064465 [+], 507530629750hypothetical protein 
20N559_20132064541..2064741 [+], 201530629751hypothetical protein 
21N559_20142064847..2066283 [+], 1437530629752hypothetical protein 
22N559_20152066305..2067198 [+], 894530629753sulfatase modifying factor 1 precursor-like protein 
23N559_20162067244..2067360 [+], 117530629754hypothetical protein 
24N559_20172067382..2068275 [+], 894530629755sulfatase modifying factor 1 
25N559_20182068451..2069344 [+], 894530629756hypothetical protein 
26N559_20192069520..2070410 [+], 891530629757hypothetical protein 
27N559_20202070528..2070887 [+], 360530629758hypothetical protein 
28N559_20212070907..2071065 [+], 159530629759hypothetical protein 
29N559_20222071632..2071898 [+], 267530629760hypothetical protein  PAAR
30N559_20272076589..2078352 [+], 1764530629761hypothetical protein  TssF
31N559_20282078307..2079398 [+], 1092530629762type VI secretion protein, VC_A0111 family  TssG
32N559_20292079427..2079915 [+], 489530629763hypothetical protein  TssJ
33N559_20302079912..2080361 [+], 450530629764hypothetical protein  TssE
34N559_20312080381..2081796 [+], 1416530629765hypothetical protein  TssA
35N559_20322081928..2082842 [+], 915530629766putative rhizopine uptake ABC transport system periplasmic solute-binding protein precursor 
36N559_20332082926..2083255 [+], 330530629767hypothetical protein 
37N559_20342083336..2084427 [-], 1092530629768GTP-dependent nucleic acid-binding protein EngD 
38N559_20352084545..2085129 [-], 585530629769peptidyl-tRNA hydrolase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A