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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SPUCDC_1883 | 1874619..1874816 [-], 198 | 537437139 | hypothetical protein | |
2 | SPUCDC_1886 | 1879515..1881626 [-], 2112 | 537437140 | RHS-family protein | TssI |
3 | SPUCDC_1887 | 1881848..1882252 [-], 405 | 537437141 | hypothetical protein | TssD |
4 | SPUCDC_1889 | 1882994..1883497 [+], 504 | 537437142 | hypothetical protein | TssB |
5 | SPUCDC_1890 | 1883527..1883739 [+], 213 | 537437143 | hypothetical protein | TssC |
6 | SPUCDC_1891 | 1883788..1885260 [+], 1473 | 537437144 | hypothetical protein | TssC |
7 | SPUCDC_1892 | 1885257..1885673 [+], 417 | 537437145 | hypothetical protein | TssE |
8 | SPUCDC_1893 | 1885678..1887531 [+], 1854 | 537437146 | hypothetical protein | TssF |
9 | SPUCDC_1894 | 1887495..1888583 [+], 1089 | 537437147 | hypothetical protein | TssG |
10 | SPUCDC_1895 | 1888608..1889894 [+], 1287 | 537437148 | hypothetical protein | Fha |
11 | SPUCDC_1896 | 1889891..1890424 [+], 534 | 537437149 | putative lipoprotein | TssJ |
12 | SPUCDC_1897 | 1890427..1891758 [+], 1332 | 537437150 | hypothetical protein | TssK |
13 | SPUCDC_1898 | 1891763..1892512 [+], 750 | 537437151 | hypothetical protein | TssL |
14 | SPUCDC_1899 | 1892525..1895116 [+], 2592 | 537437152 | putative clpB-protease | TssH |
15 | SPUCDC_1900 | 1895113..1895850 [+], 738 | 537437153 | hypothetical protein | |
16 | SPUCDC_1901 | 1895969..1897264 [+], 1296 | 537437154 | hypothetical protein | TssA |
17 | SPUCDC_1902 | 1897343..1900804 [+], 3462 | 537437155 | hypothetical protein | TssM |
18 | SPUCDC_1903 | 1900815..1902209 [+], 1395 | 537437156 | hypothetical protein | TssA |
19 | SPUCDC_1904 | 1902197..1902676 [+], 480 | 537437157 | hypothetical protein | TssD |
20 | SPUCDC_1905 | 1902709..1903581 [+], 873 | 537437158 | putative DNA-binding protein | |
21 | SPUCDC_1906 | 1904049..1904420 [+], 372 | 537437159 | hypothetical protein | |
22 | SPUCDC_1907 | 1905439..1905564 [-], 126 | 537437160 | hypothetical protein | |
23 | SPUCDC_1908 | 1905603..1905773 [-], 171 | 537437161 | hypothetical protein | |
24 | SPUCDC_1909 | 1905867..1906145 [+], 279 | 537437162 | hypothetical protein | |
25 | SPUCDC_1910 | 1906312..1907415 [-], 1104 | 537437163 | putative oxidoreductase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein