SecReT6
I. Summary
SecReT6 ID842 insolico
StrainSalmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022221
Location1879515..1902676
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121211
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SPUCDC_18831874619..1874816 [-], 198537437139hypothetical protein 
2SPUCDC_18861879515..1881626 [-], 2112537437140RHS-family protein  TssI
3SPUCDC_18871881848..1882252 [-], 405537437141hypothetical protein  TssD
4SPUCDC_18891882994..1883497 [+], 504537437142hypothetical protein  TssB
5SPUCDC_18901883527..1883739 [+], 213537437143hypothetical protein  TssC
6SPUCDC_18911883788..1885260 [+], 1473537437144hypothetical protein  TssC
7SPUCDC_18921885257..1885673 [+], 417537437145hypothetical protein  TssE
8SPUCDC_18931885678..1887531 [+], 1854537437146hypothetical protein  TssF
9SPUCDC_18941887495..1888583 [+], 1089537437147hypothetical protein  TssG
10SPUCDC_18951888608..1889894 [+], 1287537437148hypothetical protein  Fha
11SPUCDC_18961889891..1890424 [+], 534537437149putative lipoprotein  TssJ
12SPUCDC_18971890427..1891758 [+], 1332537437150hypothetical protein  TssK
13SPUCDC_18981891763..1892512 [+], 750537437151hypothetical protein  TssL
14SPUCDC_18991892525..1895116 [+], 2592537437152putative clpB-protease  TssH
15SPUCDC_19001895113..1895850 [+], 738537437153hypothetical protein 
16SPUCDC_19011895969..1897264 [+], 1296537437154hypothetical protein  TssA
17SPUCDC_19021897343..1900804 [+], 3462537437155hypothetical protein  TssM
18SPUCDC_19031900815..1902209 [+], 1395537437156hypothetical protein  TssA
19SPUCDC_19041902197..1902676 [+], 480537437157hypothetical protein  TssD
20SPUCDC_19051902709..1903581 [+], 873537437158putative DNA-binding protein 
21SPUCDC_19061904049..1904420 [+], 372537437159hypothetical protein 
22SPUCDC_19071905439..1905564 [-], 126537437160hypothetical protein 
23SPUCDC_19081905603..1905773 [-], 171537437161hypothetical protein 
24SPUCDC_19091905867..1906145 [+], 279537437162hypothetical protein 
25SPUCDC_19101906312..1907415 [-], 1104537437163putative oxidoreductase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
STY2606 , idrA, ROD_34191

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SPUCDC_0509562622..562990 [-], 369537435847hypothetical protein STY2606
2SPUCDC_18871881848..1882252 [-], 405537437141hypothetical protein idrA
3SPUCDC_31223135040..3135525 [-], 486537438314hypothetical protein ROD_34191

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Proteins        Genes

Homology Immunity protein list
STY2607

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A

Genomics & Bioinformatics Group in MML, SJTU