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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | N175_17320 | 606121..607818 [-], 1698 | 537457111 | pseudouridine synthase | |
2 | N175_17325 | 608060..608179 [+], 120 | 537457463 | hypothetical protein | |
3 | N175_17330 | 608392..609480 [+], 1089 | 537457112 | hypothetical protein | |
4 | N175_17335 | 609955..610875 [-], 921 | 537457113 | transposase IS903 | |
5 | N175_17340 | 611038..611442 [+], 405 | 537457114 | type VI secretion protein | TssB |
6 | N175_17345 | 611489..612967 [+], 1479 | 537457115 | type VI secretion protein | TssC |
7 | N175_17350 | 612970..613407 [+], 438 | 537457116 | lysozyme | TssE |
8 | N175_17355 | 613414..615183 [+], 1770 | 537457117 | type VI secretion protein | TssF |
9 | N175_17360 | 615186..616169 [+], 984 | 537457464 | hypothetical protein | TssG |
10 | N175_17365 | 616174..617646 [+], 1473 | 537457118 | signal peptide protein | Fha |
11 | N175_17370 | 617649..618128 [+], 480 | 537457119 | type VI secretion protein | TssJ |
12 | N175_17375 | 618133..619467 [+], 1335 | 537457120 | hypothetical protein | TssK |
13 | N175_17380 | 619467..620243 [+], 777 | 537457121 | type IV / VI secretion system , DotU family domain protein | TssL |
14 | N175_17385 | 620258..622885 [+], 2628 | 537457122 | ATPase AAA | TssH |
15 | N175_17390 | 622882..624450 [+], 1569 | 537457123 | ATPase AAA | VasH |
16 | N175_17395 | 624447..625106 [+], 660 | 537457124 | type VI secretion protein | |
17 | N175_17400 | 625116..626513 [+], 1398 | 537457125 | type VI secretion protein | TssA |
18 | N175_17405 | 626531..630076 [+], 3546 | 537457126 | type VI secretion protein IcmF | TssM |
19 | N175_17410 | 630134..631429 [+], 1296 | 537457127 | type VI secretion protein | TssA |
20 | N175_17415 | 631561..633645 [+], 2085 | 537457128 | type IV secretion protein Rhs | TssI |
21 | N175_17420 | 633621..634442 [+], 822 | 537457129 | hypothetical protein | |
22 | N175_17425 | 634439..636580 [+], 2142 | 537457130 | VgrG | |
23 | N175_17430 | 636582..637316 [+], 735 | 537457131 | nitroreductase | |
24 | N175_17435 | 637339..638082 [+], 744 | 537457132 | nitroreductase | |
25 | N175_17440 | 638159..638554 [+], 396 | 537457133 | membrane protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein