 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VAPA_1c05890 | 641958..643847 [-], 1890 | 538392819 | putative signal transduction histidine kinase | |
2 | VAPA_1c05900 | 644084..645103 [+], 1020 | 538392820 | putative phosphonate ABC transporter, periplasmic protein | |
3 | VAPA_1c05910 | 645118..646164 [+], 1047 | 538392821 | putative phosphonate ABC transporter, periplasmic protein | |
4 | VAPA_1c05920 | 646308..647639 [+], 1332 | 538392822 | type VI secretion protein | TssK |
5 | VAPA_1c05930 | 647672..649000 [+], 1329 | 538392823 | putative type IV / VI secretion system protein, DotU family | TssL |
6 | VAPA_1c05940 (icmF2) | 648997..652596 [+], 3600 | 538392824 | putative type VI secretion protein IcmF | TssM |
7 | VAPA_1c05950 | 652602..653225 [+], 624 | 538392825 | putative type VI secretion-associated protein, BMA_A0400 family | |
8 | VAPA_1c05960 | 653323..655227 [+], 1905 | 538392826 | putative protein kinase | |
9 | VAPA_1c05970 (mltA1) | 655281..656897 [+], 1617 | 538392827 | putative lytic murein transglycosylase MltA | |
10 | VAPA_1c05980 | 657002..657751 [+], 750 | 538392828 | hypothetical protein | |
11 | VAPA_1c05990 | 657780..658931 [+], 1152 | 538392829 | hypothetical protein | |
12 | VAPA_1c06000 | 659057..661033 [+], 1977 | 538392830 | putative peptidase | |
13 | VAPA_1c06010 | 661068..661625 [+], 558 | 538392831 | hypothetical protein | |
14 | VAPA_1c06020 | 661627..662427 [+], 801 | 538392832 | ImpE family protein | TagJ |
15 | VAPA_1c06030 | 662430..662945 [+], 516 | 538392833 | putative type VI secretion system protein, lysozyme-like protein | TssE |
16 | VAPA_1c06040 | 662953..664845 [+], 1893 | 538392834 | type VI secretion protein, VC_A0110 family | TssF |
17 | VAPA_1c06050 | 664842..665990 [+], 1149 | 538392835 | type VI secretion protein, VC_A0111 family | TssG |
18 | VAPA_1c06060 | 665987..667321 [+], 1335 | 538392836 | putative methyltransferase | |
19 | VAPA_1c06070 (clpV1) | 667391..670120 [+], 2730 | 538392837 | type VI secretion ATPase, ClpV1 family | TssH |
20 | VAPA_1c06080 | 670146..673043 [+], 2898 | 538392838 | type VI secretion system protein, Vgr family | TssI |
21 | VAPA_1c06090 | 673065..675659 [+], 2595 | 538392839 | pentapeptide repeats-containing protein | |
22 | VAPA_1c06100 | 675656..676708 [+], 1053 | 538392840 | pentapeptide repeats-containing protein | |
23 | VAPA_1c06110 | 676750..677430 [+], 681 | 538392841 | hypothetical protein | |
24 | VAPA_1c06120 | 677443..677838 [+], 396 | 538392842 | hypothetical protein | |
25 | VAPA_1c06130 | 677885..680263 [+], 2379 | 538392843 | putative type VI secretion system protein, Vgr family | TssI |
26 | VAPA_1c06140 | 680285..680767 [+], 483 | 538392844 | hypothetical protein | |
27 | VAPA_1c06150 | 680784..681908 [+], 1125 | 538392845 | hypothetical protein | |
28 | VAPA_1c06160 | 681905..682948 [+], 1044 | 538392846 | thiolase-like domain-containing protein | |
29 | VAPA_1c06170 | 683022..684170 [+], 1149 | 538392847 | hypothetical protein | |
30 | VAPA_1c06180 | 684185..685069 [+], 885 | 538392848 | hypothetical protein | |
31 | VAPA_1c06190 | 685090..686373 [+], 1284 | 538392849 | hypothetical protein | |
32 | VAPA_1c06200 | 686651..688327 [+], 1677 | 538392850 | putative type VI secretion system protein, FHA domain-containing | Fha |
33 | VAPA_1c06210 | 688403..689242 [+], 840 | 538392851 | putative protein phosphatase | |
34 | VAPA_1c06220 | 689265..689801 [-], 537 | 538392852 | N-acetylmuramoyl-L-alanine amidase domain-containing protein | |
35 | VAPA_1c06230 | 689829..690389 [-], 561 | 538392853 | hypothetical protein | |
36 | VAPA_1c06240 | 690461..690943 [-], 483 | 538392854 | putative type VI secretion system effector, Hcp1 family | TssD |
37 | VAPA_1c06250 | 691087..692580 [-], 1494 | 538392855 | type VI secretion protein, EvpB/VC_A0108 family | TssC |
38 | VAPA_1c06260 | 692621..693139 [-], 519 | 538392856 | type VI secretion protein, VC_A0107 family | TssB |
39 | VAPA_1c06270 | 693212..694243 [-], 1032 | 538392857 | type VI secretion-associated protein, ImpA family | TssA |
40 | VAPA_1c06280 | 694315..694827 [+], 513 | 538392858 | putative type VI secretion lipoprotein, VC_A0113 family | TssJ |
41 | VAPA_1c06290 | 694847..695965 [-], 1119 | 538392859 | ImcF-like N-terminal domain-containing protein | TssM |
42 | VAPA_1c06300 | 695988..697316 [-], 1329 | 538392860 | putative type IV/VI secretion system protein, DotU family | |
43 | VAPA_1c06310 | 697580..698263 [+], 684 | 538392861 | transcriptional regulator, LuxR family | |
44 | VAPA_1c06320 | 698284..699615 [-], 1332 | 538392862 | putative flavin-dependent oxidoreductase | |
45 | VAPA_1c06330 | 699651..699926 [-], 276 | 538392863 | hypothetical protein | |
46 | VAPA_1c06340 | 699926..700924 [-], 999 | 538392864 | AIR synthase-like protein, sll0787 family | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein