I. Summary
SecReT6 ID846 insolico
StrainVariovorax paradoxus B4
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VAPA_1c05890641958..643847 [-], 1890538392819putative signal transduction histidine kinase 
2VAPA_1c05900644084..645103 [+], 1020538392820putative phosphonate ABC transporter, periplasmic protein 
3VAPA_1c05910645118..646164 [+], 1047538392821putative phosphonate ABC transporter, periplasmic protein 
4VAPA_1c05920646308..647639 [+], 1332538392822type VI secretion protein  TssK
5VAPA_1c05930647672..649000 [+], 1329538392823putative type IV / VI secretion system protein, DotU family  TssL
6VAPA_1c05940 (icmF2)648997..652596 [+], 3600538392824putative type VI secretion protein IcmF  TssM
7VAPA_1c05950652602..653225 [+], 624538392825putative type VI secretion-associated protein, BMA_A0400 family 
8VAPA_1c05960653323..655227 [+], 1905538392826putative protein kinase 
9VAPA_1c05970 (mltA1)655281..656897 [+], 1617538392827putative lytic murein transglycosylase MltA 
10VAPA_1c05980657002..657751 [+], 750538392828hypothetical protein 
11VAPA_1c05990657780..658931 [+], 1152538392829hypothetical protein 
12VAPA_1c06000659057..661033 [+], 1977538392830putative peptidase 
13VAPA_1c06010661068..661625 [+], 558538392831hypothetical protein 
14VAPA_1c06020661627..662427 [+], 801538392832ImpE family protein  TagJ
15VAPA_1c06030662430..662945 [+], 516538392833putative type VI secretion system protein, lysozyme-like protein  TssE
16VAPA_1c06040662953..664845 [+], 1893538392834type VI secretion protein, VC_A0110 family  TssF
17VAPA_1c06050664842..665990 [+], 1149538392835type VI secretion protein, VC_A0111 family  TssG
18VAPA_1c06060665987..667321 [+], 1335538392836putative methyltransferase 
19VAPA_1c06070 (clpV1)667391..670120 [+], 2730538392837type VI secretion ATPase, ClpV1 family  TssH
20VAPA_1c06080670146..673043 [+], 2898538392838type VI secretion system protein, Vgr family  TssI
21VAPA_1c06090673065..675659 [+], 2595538392839pentapeptide repeats-containing protein 
22VAPA_1c06100675656..676708 [+], 1053538392840pentapeptide repeats-containing protein 
23VAPA_1c06110676750..677430 [+], 681538392841hypothetical protein 
24VAPA_1c06120677443..677838 [+], 396538392842hypothetical protein 
25VAPA_1c06130677885..680263 [+], 2379538392843putative type VI secretion system protein, Vgr family  TssI
26VAPA_1c06140680285..680767 [+], 483538392844hypothetical protein 
27VAPA_1c06150680784..681908 [+], 1125538392845hypothetical protein 
28VAPA_1c06160681905..682948 [+], 1044538392846thiolase-like domain-containing protein 
29VAPA_1c06170683022..684170 [+], 1149538392847hypothetical protein 
30VAPA_1c06180684185..685069 [+], 885538392848hypothetical protein 
31VAPA_1c06190685090..686373 [+], 1284538392849hypothetical protein 
32VAPA_1c06200686651..688327 [+], 1677538392850putative type VI secretion system protein, FHA domain-containing  Fha
33VAPA_1c06210688403..689242 [+], 840538392851putative protein phosphatase 
34VAPA_1c06220689265..689801 [-], 537538392852N-acetylmuramoyl-L-alanine amidase domain-containing protein 
35VAPA_1c06230689829..690389 [-], 561538392853hypothetical protein 
36VAPA_1c06240690461..690943 [-], 483538392854putative type VI secretion system effector, Hcp1 family  TssD
37VAPA_1c06250691087..692580 [-], 1494538392855type VI secretion protein, EvpB/VC_A0108 family  TssC
38VAPA_1c06260692621..693139 [-], 519538392856type VI secretion protein, VC_A0107 family  TssB
39VAPA_1c06270693212..694243 [-], 1032538392857type VI secretion-associated protein, ImpA family  TssA
40VAPA_1c06280694315..694827 [+], 513538392858putative type VI secretion lipoprotein, VC_A0113 family  TssJ
41VAPA_1c06290694847..695965 [-], 1119538392859ImcF-like N-terminal domain-containing protein  TssM
42VAPA_1c06300695988..697316 [-], 1329538392860putative type IV/VI secretion system protein, DotU family 
43VAPA_1c06310697580..698263 [+], 684538392861transcriptional regulator, LuxR family 
44VAPA_1c06320698284..699615 [-], 1332538392862putative flavin-dependent oxidoreductase 
45VAPA_1c06330699651..699926 [-], 276538392863hypothetical protein 
46VAPA_1c06340699926..700924 [-], 999538392864AIR synthase-like protein, sll0787 family 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.