I. Summary
SecReT6 ID848 insolico
StrainVibrio alginolyticus NBRC 15630 = ATCC 17749
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1N646_3976974610..976241 [-], 1632543974107transcriptional regulator containing GAF, AAA-type ATPase 
2N646_3977976228..978906 [-], 2679543974108putative ClpA/B-type protease  TssH
3N646_3978979363..979881 [+], 519543974109BfdA  TssD
4N646_3979979954..982032 [+], 2079543974110putative VgrG protein  TssI
5N646_3980982035..982517 [+], 483543974111hypothetical protein 
6N646_3981982612..983931 [+], 1320543974112hypothetical protein 
7N646_3982983912..984904 [+], 993543974113hypothetical protein 
8N646_3983984897..985841 [+], 945543974114hypothetical protein 
9N646_3984986079..988079 [+], 2001543974115hypothetical protein 
10N646_3985988066..989640 [+], 1575543974116hypothetical protein  TssA
11N646_3986989667..990173 [+], 507543974117hypothetical protein  TssB
12N646_3987990182..991657 [+], 1476543974118hypothetical protein  TssC
13N646_3988991719..992129 [+], 411543974119hypothetical protein  TssE
14N646_3989992140..993888 [+], 1749543974120hypothetical protein  TssF
15N646_3990993885..994883 [+], 999543974121hypothetical protein  TssG
16N646_3991994938..995390 [-], 453543974122putative transcriptional regulator 
17N646_3992995422..998811 [-], 3390543974123putative IcmF-related protein  TssM
18N646_3993998839..1000152 [-], 1314543974124hypothetical protein  TssA
19N646_39941000656..1001255 [+], 600543974125hypothetical protein 
20N646_39951001265..1002758 [+], 1494543974126hypothetical protein  Fha
21N646_39961002751..1003251 [+], 501543974127hypothetical protein  TssJ
22N646_39971003263..1004588 [+], 1326543974128hypothetical protein  TssK
23N646_39981004585..1005376 [+], 792543974129hypothetical protein  TssL
24N646_39991005524..1006981 [+], 1458543974130hypothetical protein  PAAR
25N646_40001006994..1008997 [+], 2004543974131hypothetical protein 
26N646_40011008994..1009392 [+], 399543974132hypothetical protein 
27N646_40021009658..1010041 [+], 384543974133hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
VP1388 , VEPGS_0021

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1N646_3973966937..968589 [+], 1653543974104hypothetical protein VP1388
2N646_3978979363..979881 [+], 519543974109BfdA VEPGS_0021

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Proteins        Genes

Homology Immunity protein list

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1N646_3974968662..969789 [+], 1128543974105hypothetical protein VP1389

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Proteins        Genes