I. Summary
SecReT6 ID849 insolico
StrainVibrio alginolyticus NBRC 15630 = ATCC 17749
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1N646_43931434418..1435551 [-], 1134543974524putative exonuclease SbcD 
2N646_43941435724..1435858 [+], 135543974525hypothetical protein 
3N646_43951435910..1436749 [-], 840543974526hypothetical protein 
4N646_43961436750..1437040 [-], 291543974527hypothetical protein  PAAR
5N646_43971437052..1438887 [-], 1836543974528hypothetical protein  TssI
6N646_43981438937..1439416 [-], 480543974529hypothetical protein  TssD
7N646_43991439625..1442192 [-], 2568543974530putative ClpA/B-type chaperone  TssH
8N646_44001442203..1443168 [-], 966543974531hypothetical protein  TssG
9N646_44011443165..1444988 [-], 1824543974532VAT2t  TssF
10N646_44021444985..1445449 [-], 465543974533hypothetical protein  TssE
11N646_44031445457..1446251 [-], 795543974534hypothetical protein  TagJ
12N646_44041446262..1447761 [-], 1500543974535hypothetical protein  TssC
13N646_44051447826..1449319 [-], 1494543974536hypothetical protein  TssC
14N646_44061449319..1449732 [-], 414543974537hypothetical protein  TssB
15N646_44071449865..1450980 [-], 1116543974538hypothetical protein  TssA
16N646_44081450973..1451767 [-], 795543974539putative phosphoprotein phosphatase 
17N646_44091451777..1452472 [-], 696543974540hypothetical protein 
18N646_44101452454..1455972 [-], 3519543974541hypothetical protein  TssM
19N646_44111455989..1457281 [-], 1293543974542hypothetical protein  TssL
20N646_44121457293..1458582 [-], 1290543974543hypothetical protein  TssK
21N646_44131458640..1459095 [-], 456543974544hypothetical protein  TssJ
22N646_44141459107..1460300 [-], 1194543974545hypothetical protein  Fha
23N646_44151460613..1462763 [+], 2151543974546serine/threonine protein kinase 
24N646_44161462964..1463077 [+], 114543974547hypothetical protein 
25N646_44171463234..1463569 [+], 336543974548hypothetical protein 
26N646_44181463598..1463795 [+], 198543974549hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1N646_43981438937..1439416 [-], 480543974529hypothetical protein VPA1027

Download FASTA format files
Proteins        Genes