 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | LY180_01040 | 235508..236230 [+], 723 | 544389054 | hypothetical protein | |
2 | LY180_01045 | 236227..236694 [-], 468 | 544389055 | ribonuclease H | |
3 | LY180_01050 | 236750..237490 [+], 741 | 544389056 | DNA polymerase III subunit epsilon | |
4 | LY180_01060 | 238030..238815 [+], 786 | 544389057 | hypothetical protein | |
5 | LY180_01065 | 238952..239431 [-], 480 | 544392781 | hypothetical protein | |
6 | LY180_01070 | 239441..240355 [-], 915 | 544392782 | membrane protein | |
7 | LY180_01075 | 240399..240881 [-], 483 | 544389058 | Hcp | TssD |
8 | LY180_01080 | 240905..242257 [-], 1353 | 544389059 | membrane protein | TssA |
9 | LY180_01085 | 242268..245792 [-], 3525 | 544389060 | type VI secretion protein IcmF | TssM |
10 | LY180_01090 | 245811..247223 [-], 1413 | 544389061 | CAD protein | TssA |
11 | LY180_01095 | 247228..247971 [-], 744 | 544389062 | type VI secretion protein | |
12 | LY180_01100 | 247968..250775 [-], 2808 | 544389063 | protein disaggregation chaperone | TssH |
13 | LY180_01105 | 250784..251545 [-], 762 | 544389064 | membrane protein | TssL |
14 | LY180_01110 | 251550..252881 [-], 1332 | 544389065 | hypothetical protein | TssK |
15 | LY180_01115 | 252884..253408 [-], 525 | 544389066 | hypothetical protein | TssJ |
16 | LY180_01120 | 253405..254685 [-], 1281 | 544389067 | type VI secretion system protein ImpI | Fha |
17 | LY180_01125 | 254710..255792 [-], 1083 | 544392783 | type VI secretion protein | TssG |
18 | LY180_01130 | 255756..257606 [-], 1851 | 544389068 | type VI secretion protein | TssF |
19 | LY180_01135 | 257610..258023 [-], 414 | 544392784 | type VI secretion protein | TssE |
20 | LY180_01140 | 258030..259505 [-], 1476 | 544392785 | type VI secretion protein | TssC |
21 | LY180_01145 | 259556..259780 [-], 225 | 544392786 | hypothetical protein | TssC |
22 | LY180_01150 | 259815..260315 [-], 501 | 544389069 | hypothetical protein | TssB |
23 | LY180_01155 | 260743..260886 [+], 144 | 544389070 | hypothetical protein | |
24 | LY180_01160 | 261013..261531 [+], 519 | 544389071 | hypothetical protein | TssD |
25 | LY180_01165 | 261741..263882 [+], 2142 | 544389072 | type IV secretion protein Rhs | TssI |
26 | LY180_01170 | 263958..268007 [+], 4050 | 544392787 | type IV secretion protein Rhs | PAAR |
27 | LY180_01175 | 267997..268404 [+], 408 | 544392788 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein