I. Summary

SecReT6 ID	850
Strain	Escherichia coli LY180
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_022364
Location	240399..263882
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	2	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	LY180_01040	235508..236230 [+], 723	544389054	hypothetical protein
2	LY180_01045	236227..236694 [-], 468	544389055	ribonuclease H
3	LY180_01050	236750..237490 [+], 741	544389056	DNA polymerase III subunit epsilon
4	LY180_01060	238030..238815 [+], 786	544389057	hypothetical protein
5	LY180_01065	238952..239431 [-], 480	544392781	hypothetical protein
6	LY180_01070	239441..240355 [-], 915	544392782	membrane protein
7	LY180_01075	240399..240881 [-], 483	544389058	Hcp	TssD
8	LY180_01080	240905..242257 [-], 1353	544389059	membrane protein	TssA
9	LY180_01085	242268..245792 [-], 3525	544389060	type VI secretion protein IcmF	TssM
10	LY180_01090	245811..247223 [-], 1413	544389061	CAD protein	TssA
11	LY180_01095	247228..247971 [-], 744	544389062	type VI secretion protein
12	LY180_01100	247968..250775 [-], 2808	544389063	protein disaggregation chaperone	TssH
13	LY180_01105	250784..251545 [-], 762	544389064	membrane protein	TssL
14	LY180_01110	251550..252881 [-], 1332	544389065	hypothetical protein	TssK
15	LY180_01115	252884..253408 [-], 525	544389066	hypothetical protein	TssJ
16	LY180_01120	253405..254685 [-], 1281	544389067	type VI secretion system protein ImpI	Fha
17	LY180_01125	254710..255792 [-], 1083	544392783	type VI secretion protein	TssG
18	LY180_01130	255756..257606 [-], 1851	544389068	type VI secretion protein	TssF
19	LY180_01135	257610..258023 [-], 414	544392784	type VI secretion protein	TssE
20	LY180_01140	258030..259505 [-], 1476	544392785	type VI secretion protein	TssC
21	LY180_01145	259556..259780 [-], 225	544392786	hypothetical protein	TssC
22	LY180_01150	259815..260315 [-], 501	544389069	hypothetical protein	TssB
23	LY180_01155	260743..260886 [+], 144	544389070	hypothetical protein
24	LY180_01160	261013..261531 [+], 519	544389071	hypothetical protein	TssD
25	LY180_01165	261741..263882 [+], 2142	544389072	type IV secretion protein Rhs	TssI
26	LY180_01170	263958..268007 [+], 4050	544392787	type IV secretion protein Rhs	PAAR
27	LY180_01175	267997..268404 [+], 408	544392788	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

idrA

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	LY180_01160	261013..261531 [+], 519	544389071	hypothetical protein	idrA

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Proteins        Genes

N/A

N/A