I. Summary
SecReT6 ID852 insolico
StrainEscherichia coli PMV-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECOPMV1_00220 (gloB)239040..239795 [-], 756544574633Hydroxyacylglutathione hydrolase 
2ECOPMV1_00221239829..240551 [+], 723544574634hypothetical protein 
3ECOPMV1_00222 (rnhA)240548..241015 [-], 468544574635Ribonuclease HI 
4ECOPMV1_00223 (dnaQ)241071..241811 [+], 741544574636DNA polymerase III subunit epsilon 
5ECOPMV1_00225242349..243134 [+], 786544574637hypothetical protein 
6ECOPMV1_00226 (hcpA_1)243474..243953 [-], 480544574638Secreted protein hcp  TssD
7ECOPMV1_00227243971..245329 [-], 1359544574639hypothetical protein  TssA
8ECOPMV1_00228245340..248867 [-], 3528544574640hypothetical protein  TssM
9ECOPMV1_00229248887..250329 [-], 1443544574641hypothetical protein  TssA
10ECOPMV1_00230250334..251077 [-], 744544574642type VI secretion-associated protein, family 
11ECOPMV1_00231 (clpV1_1)251074..253833 [-], 2760544574643hypothetical protein  TssH
12ECOPMV1_00232253843..254607 [-], 765544574644hypothetical protein  TssL
13ECOPMV1_00233254612..255958 [-], 1347544574645hypothetical protein  TssK
14ECOPMV1_00234255961..256485 [-], 525544574646hypothetical protein  TssJ
15ECOPMV1_00235256482..257762 [-], 1281544574647hypothetical protein  Fha
16ECOPMV1_00236257779..258828 [-], 1050544574648hypothetical protein  TssG
17ECOPMV1_00237258792..260633 [-], 1842544574649hypothetical protein  TssF
18ECOPMV1_00238260639..261064 [-], 426544574650type VI secretion system lysozyme-like protein  TssE
19ECOPMV1_00239261069..262553 [-], 1485544574651hypothetical protein  TssC
20ECOPMV1_00240262576..263079 [-], 504544574652hypothetical protein  TssB
21ECOPMV1_00241 (hcpA_2)263785..264303 [+], 519544574653Secreted protein hcp  TssD
22ECOPMV1_00242264389..264508 [+], 120544574654hypothetical protein 
23ECOPMV1_00243264524..266506 [+], 1983544574655hypothetical protein  TssI
24ECOPMV1_00244266613..267659 [+], 1047544574656hypothetical protein 
25ECOPMV1_00245267652..269091 [+], 1440544574657hypothetical protein  PAAR
26ECOPMV1_00246269066..269356 [+], 291544574658hypothetical protein 
27ECOPMV1_00247269614..269793 [+], 180544574659Transposase 
28ECOPMV1_00248269893..270378 [+], 486544574660Transposase 
29ECOPMV1_00249270607..271110 [+], 504544574661hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECOPMV1_00241(hcpA_2)263785..264303 [+], 519544574653Secreted protein hcp idrA

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Proteins        Genes