SecReT6
I. Summary
SecReT6 ID855 insolico
StrainVibrio nigripulchritudo str. SFn1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022528
Location1525597..1547728
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VIBNI_A14261521699..1523894 [-], 2196549688961putative Serine/threonine protein kinase 
2VIBNI_A14271524204..1525592 [+], 1389549688962putative Type VI secretion system, FHA domain-containing  Fha
3VIBNI_A14281525597..1526058 [+], 462549688963putative Type VI secretion system, lipoprotein VCA0113  TssJ
4VIBNI_A14291526088..1527413 [+], 1326549688964hypothetical protein  TssK
5VIBNI_A14301527428..1528762 [+], 1335549688965putative Type IV / VI secretion system, DotU fused with Type VI secretion system, OmpA/MotB  TssL
6VIBNI_A14311528759..1532283 [+], 3525549688966putative Type VI secretion system, IcmF  TssM
7VIBNI_A14321532265..1532960 [+], 696549688967putative phosphatase ImpM Type VI secretion system-associated 
8VIBNI_A14331532974..1533759 [+], 786549688968putative Serine/threonine protein phosphatase 
9VIBNI_A14341533759..1534886 [+], 1128549688969putative Type VI secretion system-associated, ImpA  TssA
10VIBNI_A14351534905..1535426 [+], 522549688970hypothetical protein  TssB
11VIBNI_A14361535426..1536919 [+], 1494549688971hypothetical protein  TssC
12VIBNI_A14371536958..1538463 [+], 1506549688972hypothetical protein  TssC
13VIBNI_A14381538478..1539281 [+], 804549688973putative virulence protein, SciE type  TagJ
14VIBNI_A14391539292..1539774 [+], 483549688974putative Type VI secretion system, lysozyme-related  TssE
15VIBNI_A14401539771..1541594 [+], 1824549688975putative Type VI secretion system, VCA0110  TssF
16VIBNI_A14411541591..1542556 [+], 966549688976hypothetical protein  TssG
17VIBNI_A1442 (clpB)1542592..1545159 [+], 2568549688977Chaperone protein clpB  TssH
18VIBNI_A14431545381..1545860 [+], 480549688978putative Virulence factor, secretion apparatus  TssD
19VIBNI_A14441545917..1547728 [+], 1812549688979putative VgrG protein  TssI
20VIBNI_A14451547794..1548705 [+], 912549688980hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VIBNI_A14431545381..1545860 [+], 480549688978putative Virulence factor, secretion apparatus VPA1027

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU