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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VIBNI_B0331 | 360491..361441 [-], 951 | 549718583 | hypothetical protein | |
2 | VIBNI_B0332 | 361434..362420 [-], 987 | 549718584 | hypothetical protein | |
3 | VIBNI_B0333 | 362483..363397 [-], 915 | 549718585 | conserved hypothetical protein with ankyrin repeats | |
4 | VIBNI_B0334 | 363397..364938 [-], 1542 | 549718586 | putative PAAR repeat-containing protein | PAAR |
5 | VIBNI_B0335 | 364938..366986 [-], 2049 | 549718587 | putative Rhs element Vgr protein | TssI |
6 | VIBNI_B0336 (hcp) | 367158..367676 [-], 519 | 549718588 | Haemolysin co-regulated protein (putative Type VI secretion system effector, Hcp1) | TssD |
7 | VIBNI_B0337 | 368833..369354 [+], 522 | 549718589 | hypothetical protein | TssB |
8 | VIBNI_B0338 | 369390..370868 [+], 1479 | 549718590 | hypothetical protein | TssC |
9 | VIBNI_B0339 | 370868..371308 [+], 441 | 549718591 | putative Type VI secretion system, lysozyme-related protein | TssE |
10 | VIBNI_B0340 | 371308..373071 [+], 1764 | 549718592 | putative Type VI secretion system, VCA0110 | TssF |
11 | VIBNI_B0341 | 373068..374054 [+], 987 | 549718593 | hypothetical protein | TssG |
12 | VIBNI_B0342 | 374061..375605 [+], 1545 | 549718594 | putative Type VI secretion system, FHA domain-containing protein | Fha |
13 | VIBNI_B0343 | 375602..376078 [+], 477 | 549718595 | putative Type VI secretion system, lipoprotein VCA0113 | TssJ |
14 | VIBNI_B0344 | 376082..377416 [+], 1335 | 549718596 | hypothetical protein | TssK |
15 | VIBNI_B0345 | 377419..378198 [+], 780 | 549718597 | putative Type IV / VI secretion system, DotU | TssL |
16 | VIBNI_B0346 (clpB) | 378269..380869 [+], 2601 | 549718598 | Chaperone protein clpB | TssH |
17 | VIBNI_B0347 | 380871..382421 [+], 1551 | 549718599 | putative FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains | |
18 | VIBNI_B0348 | 382421..383092 [+], 672 | 549718600 | putative Type VI secretion system-associated, VCA0118 | |
19 | VIBNI_B0349 | 383116..384540 [+], 1425 | 549718601 | putative Type VI secretion system-associated protein, VCA0119 | TssA |
20 | VIBNI_B0350 | 384556..388101 [+], 3546 | 549718602 | putative Type VI secretion system, IcmF | TssM |
21 | VIBNI_B0351 | 388173..389498 [+], 1326 | 549718603 | putative ATPase involved in DNA repair/Chromosome segregation | TssA |
22 | VIBNI_B0352 | 389495..390496 [+], 1002 | 549718604 | hypothetical protein | |
23 | VIBNI_B0353 | 390523..390858 [+], 336 | 549718605 | hypothetical protein | |
24 | VIBNI_B0354 | 390822..390926 [+], 105 | 549718606 | hypothetical protein | |
25 | VIBNI_B0355 | 391130..392704 [+], 1575 | 549718607 | putative signal transduction protein containing sensor and EAL domain | |
26 | VIBNI_B0356 | 392858..393199 [-], 342 | 549718608 | hypothetical protein | |
27 | VIBNI_B0357 | 393216..393350 [+], 135 | 549718609 | hypothetical protein | |
28 | VIBNI_B0358 | 393644..394273 [+], 630 | 549718610 | putative 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein