SecReT6
I. Summary
SecReT6 ID856 insolico
StrainVibrio nigripulchritudo str. SFn1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022543
Location364938..389498
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VIBNI_B0331360491..361441 [-], 951549718583hypothetical protein 
2VIBNI_B0332361434..362420 [-], 987549718584hypothetical protein 
3VIBNI_B0333362483..363397 [-], 915549718585conserved hypothetical protein with ankyrin repeats 
4VIBNI_B0334363397..364938 [-], 1542549718586putative PAAR repeat-containing protein  PAAR
5VIBNI_B0335364938..366986 [-], 2049549718587putative Rhs element Vgr protein  TssI
6VIBNI_B0336 (hcp)367158..367676 [-], 519549718588Haemolysin co-regulated protein (putative Type VI secretion system effector, Hcp1)  TssD
7VIBNI_B0337368833..369354 [+], 522549718589hypothetical protein  TssB
8VIBNI_B0338369390..370868 [+], 1479549718590hypothetical protein  TssC
9VIBNI_B0339370868..371308 [+], 441549718591putative Type VI secretion system, lysozyme-related protein  TssE
10VIBNI_B0340371308..373071 [+], 1764549718592putative Type VI secretion system, VCA0110  TssF
11VIBNI_B0341373068..374054 [+], 987549718593hypothetical protein  TssG
12VIBNI_B0342374061..375605 [+], 1545549718594putative Type VI secretion system, FHA domain-containing protein  Fha
13VIBNI_B0343375602..376078 [+], 477549718595putative Type VI secretion system, lipoprotein VCA0113  TssJ
14VIBNI_B0344376082..377416 [+], 1335549718596hypothetical protein  TssK
15VIBNI_B0345377419..378198 [+], 780549718597putative Type IV / VI secretion system, DotU  TssL
16VIBNI_B0346 (clpB)378269..380869 [+], 2601549718598Chaperone protein clpB  TssH
17VIBNI_B0347380871..382421 [+], 1551549718599putative FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
18VIBNI_B0348382421..383092 [+], 672549718600putative Type VI secretion system-associated, VCA0118 
19VIBNI_B0349383116..384540 [+], 1425549718601putative Type VI secretion system-associated protein, VCA0119  TssA
20VIBNI_B0350384556..388101 [+], 3546549718602putative Type VI secretion system, IcmF  TssM
21VIBNI_B0351388173..389498 [+], 1326549718603putative ATPase involved in DNA repair/Chromosome segregation  TssA
22VIBNI_B0352389495..390496 [+], 1002549718604hypothetical protein 
23VIBNI_B0353390523..390858 [+], 336549718605hypothetical protein 
24VIBNI_B0354390822..390926 [+], 105549718606hypothetical protein 
25VIBNI_B0355391130..392704 [+], 1575549718607putative signal transduction protein containing sensor and EAL domain 
26VIBNI_B0356392858..393199 [-], 342549718608hypothetical protein 
27VIBNI_B0357393216..393350 [+], 135549718609hypothetical protein 
28VIBNI_B0358393644..394273 [+], 630549718610putative 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VCA0017

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VIBNI_B0336(hcp)367158..367676 [-], 519549718588Haemolysin co-regulated protein (putative Type VI secretion system effector, Hcp1) VCA0017

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU