 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | STMDT2_02561 (mltD) | 299912..301279 [-], 1368 | 549722978 | membrane-bound lytic murein transglycosylase d precursor | |
2 | STMDT2_02571 (gloB) | 301351..302106 [-], 756 | 549722979 | 7 probable hydroxyacylglutathione hydrolase | |
3 | STMDT2_02581 | 302141..302863 [+], 723 | 549722980 | hypothetical protein | |
4 | STMDT2_02591 (rnhA) | 302860..303327 [-], 468 | 549722981 | ribonuclease H | |
5 | STMDT2_02601 (dnaQ) | 303391..304122 [+], 732 | 549722982 | DNA polymerase III epsilon subunit | |
6 | STMDT2_02611 (sciA) | 304654..305709 [-], 1056 | 549722983 | virulence associated protein | TssA |
7 | STMDT2_02621 (sciB) | 305720..306715 [-], 996 | 549722984 | virulence associated protein | TssG |
8 | STMDT2_02631 (sciC) | 306712..308595 [-], 1884 | 549722985 | virulence associated protein | TssF |
9 | STMDT2_02641 (sciD) | 308611..309105 [-], 495 | 549722986 | virulence associated protein | TssE |
10 | STMDT2_02651 (sciE) | 309102..309926 [-], 825 | 549722987 | virulence associated protein | TagJ |
11 | STMDT2_02661 (sciF) | 309913..310815 [-], 903 | 549722988 | virulence associated protein | |
12 | STMDT2_02671 (sciG) | 311183..313822 [+], 2640 | 549722989 | virulence associated protein | TssH |
13 | STMDT2_02681 (sciH) | 313922..314464 [+], 543 | 549722990 | virulence associated protein | TssB |
14 | STMDT2_02691 (sciI) | 314488..315981 [+], 1494 | 549722991 | virulence associated protein | TssC |
15 | STMDT2_02701 | 315996..316154 [+], 159 | 549722992 | hypothetical protein | |
16 | STMDT2_02711 | 316167..316613 [+], 447 | 549722993 | hypothetical protein | |
17 | STMDT2_02721 (sciK) | 316867..317352 [+], 486 | 549722994 | virulence associated protein | TssD |
18 | STMDT2_02731 | 317657..318142 [+], 486 | 549722995 | hypothetical protein | STM0277 (e) |
19 | STMDT2_02741 | 318127..318510 [+], 384 | 549722996 | hypothetical protein | STM0278 (i) |
20 | STMDT2_02751 (sciK1) | 318653..319138 [+], 486 | 549722997 | virulence associated protein | TssD |
21 | STMDT2_02761 (sciN) | 319205..319741 [+], 537 | 549722998 | hypothetical protein | TssJ |
22 | STMDT2_02771 (sciO) | 319745..321088 [+], 1344 | 549722999 | virulence associated protein | TssK |
23 | STMDT2_02781 (sciP) | 321085..322389 [+], 1305 | 549723000 | putative membrane protein, virulence associated protein | TssL |
24 | STMDT2_02791 (sciQ) | 322394..323167 [+], 774 | 549723001 | putative membrane protein, virulence associated protein | |
25 | STMDT2_02801 | 323370..323801 [+], 432 | 549723002 | hypothetical protein | |
26 | STMDT2_02811 (sciS) | 323835..327704 [+], 3870 | 549723003 | probable IcmF-related integral membrane ATP-binding protein, virulence associated protein | TssM |
27 | STMDT2_02821 | 327704..328492 [+], 789 | 549723004 | hypothetical protein | |
28 | STMDT2_02831 (sciU) | 328489..328905 [+], 417 | 549723005 | virulence associated,probable secreted protein | |
29 | STMDT2_02841 | 328929..329450 [+], 522 | 549723006 | conserved hypothetical pathogenicity island protein | |
30 | STMDT2_02851 (vrgS) | 329847..332036 [+], 2190 | 549723007 | Type VI secretion protein | TssI |
31 | STMDT2_02861 (sciW) | 332060..332506 [+], 447 | 549723008 | virulence associated protein | |
32 | STMDT2_02862 | 332519..336619 [+], 4101 | 549723009 | hypothetical protein | PAAR |
33 | STMDT2_02871 | 336613..336876 [+], 264 | 549723010 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein