 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | DT104_02591 (mltD) | 299922..301289 [-], 1368 | 550899675 | membrane-bound lytic murein transglycosylase d precursor | |
2 | DT104_02601 (gloB) | 301361..302116 [-], 756 | 550899676 | probable hydroxyacylglutathione hydrolase | |
3 | DT104_02611 | 302151..302873 [+], 723 | 550899677 | conserved hypothetical protein | |
4 | DT104_02621 (rnhA) | 302870..303337 [-], 468 | 550899678 | Ribonuclease H | |
5 | DT104_02631 (dnaQ) | 303401..304132 [+], 732 | 550899679 | DNA polymerase III epsilon subunit | |
6 | DT104_02641 | 304664..305719 [-], 1056 | 550899680 | conserved hypothetical pathogenicity island protein | TssA |
7 | DT104_02661 (sciC) | 306722..308605 [-], 1884 | 550899681 | uncharacterized type IV secretion system SciC protein | TssF |
8 | DT104_02671 (sciD) | 308621..309115 [-], 495 | 550899682 | type vi secretion system lysozyme-like SciD protein | TssE |
9 | DT104_02681 (sciE) | 309112..309936 [-], 825 | 550899683 | type IV secretion system SciE protein | TagJ |
10 | DT104_02691 (sciF) | 309923..310825 [-], 903 | 550899684 | tyep IV secretion system Scif protein | |
11 | DT104_02701 (sciG) | 311193..313832 [+], 2640 | 550899685 | type IV secretion system SciG protein | TssH |
12 | DT104_02711 (sciH) | 313932..314474 [+], 543 | 550899686 | type IV secretion system SciH protein | TssB |
13 | DT104_02721 (sciI) | 314498..316006 [+], 1509 | 550899687 | type IV secretion system SciI protein | TssC |
14 | DT104_02731 | 316021..316179 [+], 159 | 550899688 | invasol SirA | |
15 | DT104_02741 (sciJ) | 316192..316638 [+], 447 | 550899689 | type VI secretion system SciJ protein flags: precursor | |
16 | DT104_02751 (sciK) | 316892..317377 [+], 486 | 550899690 | type IV secretion system SciK protein | TssD |
17 | DT104_02761 (sciL) | 317682..318167 [+], 486 | 550899691 | type IV secretion system SciL protein | STM0277 (e) |
18 | DT104_02771 | 318152..318535 [+], 384 | 550899692 | putative periplasmic protein | STM0278 (i) |
19 | DT104_02781 (sciM) | 318678..319163 [+], 486 | 550899693 | type IV secretion system hemolysin-coregulated SciM protein | TssD |
20 | DT104_02791 (sciN) | 319230..319766 [+], 537 | 550899694 | type IV secretion system SciN protein flags: precursor | TssJ |
21 | DT104_02801 (sciO) | 319770..321113 [+], 1344 | 550899695 | tyep IV secretion SciO protein | TssK |
22 | DT104_02811 (sciP) | 321110..322414 [+], 1305 | 550899696 | type IV secretion system SciP protein | TssL |
23 | DT104_02821 (sciQ) | 322419..323192 [+], 774 | 550899697 | putative membrane protein, virulence associated SciQ protein | |
24 | DT104_02831 (sciR) | 323395..323826 [+], 432 | 550899698 | shiga-like toxin a subunit, type VI secretion system SciR protein flags: precursor | |
25 | DT104_02841 (sciS) | 323860..327729 [+], 3870 | 550899699 | putative icmf-related integral membrane atp-binding protein, virulence associated SciS protein | TssM |
26 | DT104_02851 (sciT) | 327729..328517 [+], 789 | 550899700 | putative cytoplasmic SciT protein | |
27 | DT104_02861 (sciU) | 328514..328930 [+], 417 | 550899701 | uncharacterized SciU protein | |
28 | DT104_02871 | 328954..329475 [+], 522 | 550899702 | conserved hypothetical pathogenicity island protein | |
29 | DT104_02866 | 328957..329475 [+], 519 | 550899703 | SPI6-associated protein, partial | |
30 | DT104_02881 (vgrG) | 329872..332061 [+], 2190 | 550899704 | VgrG protein | TssI |
31 | DT104_02891 (sciW) | 332085..332531 [+], 447 | 550899705 | SciW protein | |
32 | DT104_02901 | 332550..334076 [+], 1527 | 550899706 | rhs1 protein flags: fragment | PAAR |
33 | DT104_02911 | 333973..334554 [+], 582 | 550899707 | putative rhs-family protein | |
34 | DT104_02921 (sciX) | 334548..334994 [+], 447 | 550899708 | SciX protein | |
35 | DT104_02931 (sciY) | 335557..335994 [+], 438 | 550899709 | SciY protein | |
36 | DT104_02941 | 336047..336322 [-], 276 | 550899710 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein