I. Summary
SecReT6 ID862 insolico
StrainEscherichia coli JJ1886
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1P423_153603128410..3129615 [+], 1206556552721cysteine sulfinate desulfinase 
2P423_153653129615..3130058 [+], 444556552722CsdA-binding activator 
3P423_153703130109..3130915 [-], 807556552723sulfur acceptor protein CsdL 
4P423_15375 (mltA)3130992..3132089 [-], 1098556552724murein transglycosylase A 
5P423_153953133230..3133730 [+], 501556552725hypothetical protein  TssB
6P423_154003133789..3135327 [+], 1539556554732EvpB/family type VI secretion protein  TssC
7P423_154053135345..3136682 [+], 1338556554733hypothetical protein  TssK
8P423_154103136679..3137344 [+], 666556554734type VI secretion protein ImpK  TssL
9P423_154153137357..3139009 [+], 1653556554735OmpA family protein  TagL
10P423_154203139067..3139558 [+], 492556554736Hcp family type VI secretion system effector  TssD
11P423_154253139749..3142385 [+], 2637556552726protein disaggregation chaperone  TssH
12P423_154303142397..3144721 [+], 2325556554737type IV secretion protein Rhs  TssI
13P423_154353144733..3147096 [+], 2364556554738hypothetical protein 
14P423_154403147093..3147950 [+], 858556554739hypothetical protein 
15P423_154453148414..3150792 [+], 2379556554740type IV secretion protein Rhs  TssI
16P423_154503150795..3151616 [+], 822556554741hypothetical protein 
17P423_154553151660..3152187 [+], 528556554742hypothetical protein 
18P423_154603152184..3154052 [+], 1869556554743hypothetical protein 
19P423_154653154158..3156671 [+], 2514556554744type IV secretion protein Rhs  TssI
20P423_154703156693..3157295 [+], 603556554745hypothetical protein 
21P423_154753157398..3157847 [+], 450556554746hypothetical protein 
22P423_154803157925..3159139 [+], 1215556554747hypothetical protein 
23P423_154853159139..3160818 [+], 1680556554748hypothetical protein 
24P423_154903161184..3162500 [+], 1317556554749hypothetical protein 
25P423_154953162515..3163261 [+], 747556554750ATP-binding protein 
26P423_155003163312..3165114 [+], 1803556554751membrane protein  TssM
27P423_155053165107..3166717 [+], 1611556554752hypothetical protein  TssA
28P423_155103166717..3168141 [+], 1425556554753paar  PAAR
29P423_155153168134..3168556 [+], 423556554754hypothetical protein 
30P423_155203169116..3170876 [+], 1761556554755type VI secretion protein ImpG  TssF
31P423_155253170840..3171919 [+], 1080556554756hypothetical protein  TssG
32P423_155303171900..3172244 [+], 345556554757hypothetical protein  TssJ
33P423_155353173891..3174241 [-], 351556552727isocitrate lyase 
34P423_155403174238..3174663 [-], 426556554758transposase 
35P423_155453174799..3174975 [+], 177556554759hypothetical protein  TssJ
36P423_155503174979..3175407 [+], 429556554760hypothetical protein  TssE
37P423_155553175407..3176783 [+], 1377556554761impA family protein  TssA
38P423_155603177083..3178030 [-], 948556554762phosphoglycerate dehydrogenase 
39P423_155653178102..3178698 [-], 597556554763isomerase 
40P423_155703178701..3179876 [-], 1176556554764aminotransferase 
41P423_155753179876..3181456 [-], 1581556552728PTS maltose transporter subunit IICB 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1P423_154203139067..3139558 [+], 492556554736Hcp family type VI secretion system effector EC042_4529

Download FASTA format files
Proteins        Genes