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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BBK_5356 | 2275107..2276078 [+], 972 | 556574150 | zinc-binding dehydrogenase family protein | |
2 | BBK_5357 | 2276133..2277059 [+], 927 | 556573420 | catalytic LigB subunit of aromatic ring-opening dioxygenase family protein | |
3 | BBK_5358 | 2277303..2278196 [-], 894 | 556572791 | bacterial regulatory helix-turn-helix , lysR family protein | |
4 | BBK_5359 | 2279487..2283563 [-], 4077 | 556574438 | intracellular multiplication and macrophage-killing family protein | TssM |
5 | BBK_5360 | 2283592..2284857 [-], 1266 | 556573238 | type VI secretion system OmpA/MotB family protein | TssL |
6 | BBK_5361 | 2284946..2286292 [-], 1347 | 556572843 | hypothetical protein | TssK |
7 | BBK_5362 | 2286314..2286817 [-], 504 | 556572228 | type VI secretion lipofamily protein | TssJ |
8 | BBK_5363 (hcp1) | 2286925..2287410 [-], 486 | 556573107 | protein hcp1 | TssD |
9 | BBK_5364 | 2287527..2289026 [-], 1500 | 556572068 | hypothetical protein | TssC |
10 | BBK_5365 | 2289061..2289642 [-], 582 | 556572573 | hypothetical protein | TssB |
11 | BBK_5366 (clpV) | 2289678..2292617 [-], 2940 | 556572269 | type VI secretion ATPase, ClpV1 family | TssH |
12 | BBK_5367 | 2293248..2293868 [+], 621 | 556573538 | hypothetical protein | |
13 | BBK_5368 | 2293865..2294830 [+], 966 | 556572630 | impE family protein | TagJ |
14 | BBK_5369 | 2294817..2295398 [+], 582 | 556572202 | lysozyme family protein | TssE |
15 | BBK_5370 | 2295429..2297318 [+], 1890 | 556572899 | hypothetical protein | TssF |
16 | BBK_5371 | 2297318..2298403 [+], 1086 | 556572623 | hypothetical protein | TssG |
17 | BBK_5372 | 2298400..2299533 [+], 1134 | 556572238 | impA-related N-terminal family protein | TssA |
18 | BBK_5373 | 2299716..2300630 [-], 915 | 556572825 | hypothetical protein | |
19 | BBK_5374 | 2300662..2301933 [+], 1272 | 556573500 | Rhs element Vgr family protein | TssI |
20 | BBK_5375 | 2301965..2304442 [+], 2478 | 556574488 | pentapeptide repeats family protein | |
21 | BBK_5376 | 2304439..2305521 [+], 1083 | 556574050 | pentapeptide repeats family protein | |
22 | BBK_5377 | 2305703..2306362 [+], 660 | 556572075 | hypothetical protein | |
23 | BBK_5378 | 2306403..2306783 [+], 381 | 556573638 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein