I. Summary

SecReT6 ID	866
Strain	Burkholderia pseudomallei NCTC 13179
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_022658
Location	2279487..2301933
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BBK_5356	2275107..2276078 [+], 972	556574150	zinc-binding dehydrogenase family protein
2	BBK_5357	2276133..2277059 [+], 927	556573420	catalytic LigB subunit of aromatic ring-opening dioxygenase family protein
3	BBK_5358	2277303..2278196 [-], 894	556572791	bacterial regulatory helix-turn-helix , lysR family protein
4	BBK_5359	2279487..2283563 [-], 4077	556574438	intracellular multiplication and macrophage-killing family protein	TssM
5	BBK_5360	2283592..2284857 [-], 1266	556573238	type VI secretion system OmpA/MotB family protein	TssL
6	BBK_5361	2284946..2286292 [-], 1347	556572843	hypothetical protein	TssK
7	BBK_5362	2286314..2286817 [-], 504	556572228	type VI secretion lipofamily protein	TssJ
8	BBK_5363 (hcp1)	2286925..2287410 [-], 486	556573107	protein hcp1	TssD
9	BBK_5364	2287527..2289026 [-], 1500	556572068	hypothetical protein	TssC
10	BBK_5365	2289061..2289642 [-], 582	556572573	hypothetical protein	TssB
11	BBK_5366 (clpV)	2289678..2292617 [-], 2940	556572269	type VI secretion ATPase, ClpV1 family	TssH
12	BBK_5367	2293248..2293868 [+], 621	556573538	hypothetical protein
13	BBK_5368	2293865..2294830 [+], 966	556572630	impE family protein	TagJ
14	BBK_5369	2294817..2295398 [+], 582	556572202	lysozyme family protein	TssE
15	BBK_5370	2295429..2297318 [+], 1890	556572899	hypothetical protein	TssF
16	BBK_5371	2297318..2298403 [+], 1086	556572623	hypothetical protein	TssG
17	BBK_5372	2298400..2299533 [+], 1134	556572238	impA-related N-terminal family protein	TssA
18	BBK_5373	2299716..2300630 [-], 915	556572825	hypothetical protein
19	BBK_5374	2300662..2301933 [+], 1272	556573500	Rhs element Vgr family protein	TssI
20	BBK_5375	2301965..2304442 [+], 2478	556574488	pentapeptide repeats family protein
21	BBK_5376	2304439..2305521 [+], 1083	556574050	pentapeptide repeats family protein
22	BBK_5377	2305703..2306362 [+], 660	556572075	hypothetical protein
23	BBK_5378	2306403..2306783 [+], 381	556573638	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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