I. Summary

SecReT6 ID	869
Strain	Pseudomonas sp. VLB120
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_022738
Location	2163444..2182172
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PVLB_09855	2160004..2162214 [+], 2211	557222679	glycogen branching enzyme
2	PVLB_09860	2162346..2162609 [+], 264	557222680	hypothetical protein	PAAR
3	PVLB_09865	2163444..2165000 [+], 1557	557222681	hypothetical protein	TssA
4	PVLB_09870	2165034..2165534 [+], 501	557222682	hypothetical protein	TssB
5	PVLB_09875	2165562..2167034 [+], 1473	557222683	hypothetical protein	TssC
6	PVLB_09880	2167042..2167464 [+], 423	557222684	hypothetical protein	TssE
7	PVLB_09885	2167593..2169380 [+], 1788	557222685	hypothetical protein	TssF
8	PVLB_09890	2169344..2170351 [+], 1008	557222686	hypothetical protein	TssG
9	PVLB_09895	2170364..2172970 [+], 2607	557222687	ClpA/B-type protease	TssH
10	PVLB_09900	2172981..2174510 [+], 1530	557222688	sigma-54 dependent transcriptional regulator	Sfa2
11	PVLB_09905	2174579..2174719 [+], 141	557222689	hypothetical protein
12	PVLB_09910	2174738..2175919 [+], 1182	557222690	hypothetical protein	Fha
13	PVLB_09915	2175924..2176430 [+], 507	557222691	hypothetical protein	TssJ
14	PVLB_09920	2176427..2177758 [+], 1332	557222692	hypothetical protein	TssK
15	PVLB_09925	2177764..2178630 [+], 867	557222693	putative outer membrane protein	TssL
16	PVLB_09930	2178645..2182172 [+], 3528	557222694	type VI secretion protein IcmF	TssM
17	PVLB_09935	2182172..2182900 [+], 729	557222695	serine/threonine phosphoprotein phosphatase Stp1	Stp1
18	PVLB_09940	2182897..2183964 [+], 1068	557222696	serine-threonine kinase Stk1	Stk1
19	PVLB_09945	2183952..2185574 [-], 1623	557222697	hypothetical protein
20	PVLB_09950	2185851..2186285 [+], 435	557222698	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

PSPTO_5435 , PSPTO_5435, PSPTO_5435

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	PVLB_16970	3757341..3757859 [-], 519	557224087	hemolysin co-regulated protein 1C	PSPTO_5435
2	PVLB_21000	4620093..4620611 [+], 519	557224893	hemolysin co-regulated protein 1C	PSPTO_5435
3	PVLB_22500	4965792..4966310 [-], 519	557225191	hemolysin co-regulated protein 1C	PSPTO_5435

Download FASTA format files

Proteins        Genes

N/A

N/A