 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PVLB_09855 | 2160004..2162214 [+], 2211 | 557222679 | glycogen branching enzyme | |
2 | PVLB_09860 | 2162346..2162609 [+], 264 | 557222680 | hypothetical protein | PAAR |
3 | PVLB_09865 | 2163444..2165000 [+], 1557 | 557222681 | hypothetical protein | TssA |
4 | PVLB_09870 | 2165034..2165534 [+], 501 | 557222682 | hypothetical protein | TssB |
5 | PVLB_09875 | 2165562..2167034 [+], 1473 | 557222683 | hypothetical protein | TssC |
6 | PVLB_09880 | 2167042..2167464 [+], 423 | 557222684 | hypothetical protein | TssE |
7 | PVLB_09885 | 2167593..2169380 [+], 1788 | 557222685 | hypothetical protein | TssF |
8 | PVLB_09890 | 2169344..2170351 [+], 1008 | 557222686 | hypothetical protein | TssG |
9 | PVLB_09895 | 2170364..2172970 [+], 2607 | 557222687 | ClpA/B-type protease | TssH |
10 | PVLB_09900 | 2172981..2174510 [+], 1530 | 557222688 | sigma-54 dependent transcriptional regulator | Sfa2 |
11 | PVLB_09905 | 2174579..2174719 [+], 141 | 557222689 | hypothetical protein | |
12 | PVLB_09910 | 2174738..2175919 [+], 1182 | 557222690 | hypothetical protein | Fha |
13 | PVLB_09915 | 2175924..2176430 [+], 507 | 557222691 | hypothetical protein | TssJ |
14 | PVLB_09920 | 2176427..2177758 [+], 1332 | 557222692 | hypothetical protein | TssK |
15 | PVLB_09925 | 2177764..2178630 [+], 867 | 557222693 | putative outer membrane protein | TssL |
16 | PVLB_09930 | 2178645..2182172 [+], 3528 | 557222694 | type VI secretion protein IcmF | TssM |
17 | PVLB_09935 | 2182172..2182900 [+], 729 | 557222695 | serine/threonine phosphoprotein phosphatase Stp1 | Stp1 |
18 | PVLB_09940 | 2182897..2183964 [+], 1068 | 557222696 | serine-threonine kinase Stk1 | Stk1 |
19 | PVLB_09945 | 2183952..2185574 [-], 1623 | 557222697 | hypothetical protein | |
20 | PVLB_09950 | 2185851..2186285 [+], 435 | 557222698 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein