I. Summary
SecReT6 ID87 insolico
StrainDechloromonas aromatica RCB
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Daro_21602329984..2331159 [+], 117671907783secretion protein HlyD 
2Daro_21612331169..2334291 [+], 312371907784hydrophobe/amphiphile efflux-1 HAE1 
3Daro_21622334288..2335715 [+], 142871907785RND efflux system, outer membrane lipoprotein, NodT 
4Daro_21632335809..2336441 [-], 63371907786hypothetical protein 
5Daro_21652336665..2338053 [-], 138971907787hypothetical protein 
6Daro_21662338053..2338604 [-], 55271907788hypothetical protein 
7Daro_21672338608..2338874 [-], 26771907789hypothetical protein 
8Daro_21682338874..2339767 [-], 89471907790hypothetical protein 
9Daro_21692339770..2342571 [-], 280271907791Rhs element Vgr protein  TssI
10Daro_21702342699..2343172 [-], 47471907792hypothetical protein 
11Daro_21712343212..2345911 [-], 270071907793ATPase AAA  TssH
12Daro_21722345929..2346993 [-], 106571907794hypothetical protein  TssG
13Daro_21732346957..2348789 [-], 183371907795hypothetical protein  TssF
14Daro_21742348790..2349269 [-], 48071907796hypothetical protein  TssE
15Daro_21752349318..2349854 [-], 53771907797hypothetical protein  TssD
16Daro_21762349887..2351371 [-], 148571907798hypothetical protein  TssC
17Daro_21772351368..2351880 [-], 51371907799hypothetical protein  TssB
18Daro_21782351961..2352578 [-], 61871907800lipoprotein 
19Daro_21792352804..2353373 [+], 57071907801lipoprotein  TssJ
20Daro_21802353386..2354729 [+], 134471907802hypothetical protein  TssK
21Daro_21812354726..2355499 [+], 77471907803hypothetical protein  TssL
22Daro_21822355510..2358245 [+], 273671907804Rhs element Vgr protein  TssI
23Daro_21832358220..2358942 [+], 72371907805hypothetical protein 
24Daro_21842358939..2359379 [+], 44171907806transmembrane protein 
25Daro_21852359672..2360769 [+], 109871907807ImpA, N-terminal  TssA
26Daro_21862360816..2361601 [-], 78671907808OmpA/MotB  TagL
27Daro_21872361598..2362581 [-], 98471907809hypothetical protein 
28Daro_21882362578..2366390 [-], 381371907810hypothetical protein  TssM
29Daro_21892366412..2367833 [-], 142271907811hypothetical protein 
30Daro_21902367853..2368119 [-], 26771907812PAAR  PAAR
31Daro_21912368163..2369011 [-], 84971907813hypothetical protein 
32Daro_21922369211..2369801 [+], 59171907814hypothetical protein 
33Daro_21932369943..2370602 [-], 66071907815ankyrin 
34Daro_21942370608..2371381 [-], 77471907816TatD-related deoxyribonuclease 
35Daro_21952371391..2371753 [-], 36371907817Type IV pilus assembly PilZ 
36Daro_21962371760..2372779 [-], 102071907818DNA polymerase III subunit delta' 
37Daro_2197 (tmk)2372776..2373390 [-], 61571907819thymidylate kinase 
38Daro_21982373387..2374382 [-], 99671907820aminodeoxychorismate lyase 
39Daro_21992374475..2375494 [+], 102071907821glycine cleavage T protein (aminomethyl transferase) 
40Daro_22002375507..2376256 [+], 75071907822hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation