 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PA1R_gp0154 | 185618..186802 [-], 1185 | 558666116 | Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme | |
2 | PA1R_gp0155 | 186832..187977 [-], 1146 | 558666117 | Alkanesulfonate monooxygenase | |
3 | PA1R_gp0156 | 187987..188547 [-], 561 | 558666118 | FMN reductase | |
4 | PA1R_gp0157 | 188707..188973 [-], 267 | 558666119 | hypothetical protein | |
5 | PA1R_gp0158 | 188950..189198 [+], 249 | 558666120 | hypothetical protein | |
6 | PA1R_gp0159 | 189209..190294 [-], 1086 | 558666121 | Sigma-54 dependent transcriptional regulator | Sfa3 |
7 | PA1R_gp0160 | 190404..191504 [-], 1101 | 558666122 | Uncharacterized protein ImpA | TssA |
8 | PA1R_gp0161 | 191501..195316 [-], 3816 | 558666123 | IcmF-related protein | TssM |
9 | PA1R_gp0162 | 195313..196071 [-], 759 | 558666124 | Inner membrane protein DotU | TssL |
10 | PA1R_gp0163 | 196089..197381 [-], 1293 | 558666125 | Uncharacterized protein ImpJ/VasE | TssK |
11 | PA1R_gp0164 | 197480..197956 [-], 477 | 558666126 | hypothetical protein | |
12 | PA1R_gp0165 | 198165..198710 [+], 546 | 558666127 | Uncharacterized protein ImpB | TssB |
13 | PA1R_gp0166 | 198733..200217 [+], 1485 | 558666128 | Uncharacterized protein ImpC | TssC |
14 | PA1R_gp0167 | 200291..200788 [+], 498 | 558666129 | Putative cytoplasmic protein USSDB7A | TssD |
15 | PA1R_gp0168 | 200801..201226 [+], 426 | 558666130 | Uncharacterized protein ImpF | TssE |
16 | PA1R_gp0169 | 201210..203003 [+], 1794 | 558666131 | Protein ImpG/VasA | TssF |
17 | PA1R_gp0170 | 202967..203983 [+], 1017 | 558666132 | Uncharacterized protein ImpH/VasB | TssG |
18 | PA1R_gp0171 | 203985..206534 [+], 2550 | 558666133 | ClpB protein | TssH |
19 | PA1R_gp0172 | 206608..207141 [+], 534 | 558666134 | hypothetical protein | |
20 | PA1R_gp0173 | 207249..208247 [+], 999 | 558666135 | hypothetical protein | |
21 | PA1R_gp0174 | 208284..210290 [+], 2007 | 558666136 | VgrG protein | TssI |
22 | PA1R_gp0175 | 210301..210837 [+], 537 | 558666137 | hypothetical protein | |
23 | PA1R_gp0176 | 210860..211255 [-], 396 | 558666138 | hypothetical protein | |
24 | PA1R_gp0177 | 211532..212173 [+], 642 | 558666139 | DNA-binding response regulator, LuxR family | |
25 | PA1R_gp0178 | 212374..213579 [+], 1206 | 558666140 | putative ABC-type transport protein, periplasmic component | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein