 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PA1R_gp3588 | 4015742..4018840 [-], 3099 | 558669492 | Serine/threonine protein kinase | PpkA |
2 | PA1R_gp3589 | 4018848..4019576 [-], 729 | 558669493 | Phosphoprotein phosphatase PppA | PppA |
3 | PA1R_gp3590 | 4019586..4020266 [-], 681 | 558669494 | Protein phosphatase ImpM | TagF |
4 | PA1R_gp3591 | 4020263..4023796 [-], 3534 | 558669495 | IcmF-related protein | TssM |
5 | PA1R_gp3592 | 4023793..4025142 [-], 1350 | 558669496 | Outer membrane protein ImpK/VasF, OmpA/MotB domain protein | TssL |
6 | PA1R_gp3593 | 4025149..4026483 [-], 1335 | 558669497 | Uncharacterized protein ImpJ/VasE | TssK |
7 | PA1R_gp3594 | 4026499..4026963 [-], 465 | 558669498 | Type VI secretion lipoprotein/VasD | TssJ |
8 | PA1R_gp3595 | 4027008..4028501 [-], 1494 | 558669499 | Uncharacterized protein ImpI/VasC | Fha |
9 | PA1R_gp3596 | 4028869..4029903 [+], 1035 | 558669500 | Uncharacterized protein ImpA | TssA |
10 | PA1R_gp3597 | 4029992..4030510 [+], 519 | 558669501 | Uncharacterized protein ImpB | TssB |
11 | PA1R_gp3598 | 4030523..4032019 [+], 1497 | 558669502 | Uncharacterized protein ImpC | TssC |
12 | PA1R_gp3599 | 4032095..4032583 [+], 489 | 558669503 | Uncharacterized protein ImpD | TssD |
13 | PA1R_gp3600 | 4032811..4033596 [+], 786 | 558669504 | Protein of avirulence locus ImpE | TagJ |
14 | PA1R_gp3601 | 4033598..4034107 [+], 510 | 558669505 | Uncharacterized protein ImpF | TssE |
15 | PA1R_gp3602 | 4034104..4035963 [+], 1860 | 558669506 | Protein ImpG/VasA | TssF |
16 | PA1R_gp3603 | 4035927..4036973 [+], 1047 | 558669507 | Uncharacterized protein ImpH/VasB | TssG |
17 | PA1R_gp3604 | 4036966..4039674 [+], 2709 | 558669508 | ClpB protein | TssH |
18 | PA1R_gp3605 | 4039712..4041652 [+], 1941 | 558669509 | VgrG protein | TssI |
19 | PA1R_gp3606 | 4041767..4042051 [-], 285 | 558669510 | hypothetical protein | Tsi6 (i) |
20 | PA1R_gp3607 | 4042048..4043340 [-], 1293 | 558669511 | Rhs family protein | Tse6 (e) |
21 | PA1R_gp3608 | 4043356..4043790 [-], 435 | 558669512 | hypothetical protein | |
22 | PA1R_gp3609 | 4044044..4046269 [+], 2226 | 558669513 | VgrG protein | TssI |
23 | PA1R_gp3610 | 4046297..4046746 [+], 450 | 558669514 | hypothetical protein | |
24 | PA1R_gp3611 | 4046763..4047875 [+], 1113 | 558669515 | hypothetical protein | |
25 | PA1R_gp3612 | 4047872..4048909 [+], 1038 | 558669516 | 3-oxoacyl-[ACP] synthase | |
26 | PA1R_gp3613 | 4048910..4049857 [+], 948 | 558669517 | hypothetical protein | |
27 | PA1R_gp3614 | 4049868..4050782 [+], 915 | 558669518 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein