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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PA1R_gp5233 | 5820660..5821295 [+], 636 | 558671123 | hypothetical protein | |
2 | PA1R_gp5234 | 5821346..5821822 [-], 477 | 558671124 | Transcriptional regulator, MarR family | |
3 | PA1R_gp5235 | 5821943..5823070 [+], 1128 | 558671125 | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic-like protein | |
4 | PA1R_gp5236 | 5823126..5823728 [+], 603 | 558671126 | Glutathione S-transferase, unnamed subgroup | |
5 | PA1R_gp5237 | 5824901..5826457 [+], 1557 | 558671127 | Uncharacterized protein ImpA | TssA |
6 | PA1R_gp5238 | 5826493..5826999 [+], 507 | 558671128 | Uncharacterized protein ImpB | TssB |
7 | PA1R_gp5239 | 5827028..5828503 [+], 1476 | 558671129 | Uncharacterized protein ImpC | TssC |
8 | PA1R_gp5240 | 5828516..5828923 [+], 408 | 558671130 | hypothetical protein | TssE |
9 | PA1R_gp5241 | 5829261..5831048 [+], 1788 | 558671131 | Protein ImpG/VasA | TssF |
10 | PA1R_gp5242 | 5831012..5832019 [+], 1008 | 558671132 | Uncharacterized protein ImpH/VasB | TssG |
11 | PA1R_gp5243 | 5832032..5834659 [+], 2628 | 558671133 | ClpB protein | TssH |
12 | PA1R_gp5244 | 5834670..5836181 [+], 1512 | 558671134 | Sigma-54 dependent transcriptional regulator | Sfa2 |
13 | PA1R_gp5245 | 5836428..5837621 [+], 1194 | 558671135 | Uncharacterized protein ImpI/VasC | Fha |
14 | PA1R_gp5246 | 5837618..5838133 [+], 516 | 558671136 | Type VI secretion lipoprotein/VasD | TssJ |
15 | PA1R_gp5247 | 5838130..5839461 [+], 1332 | 558671137 | Uncharacterized protein ImpJ/VasE | TssK |
16 | PA1R_gp5248 | 5839464..5840333 [+], 870 | 558671138 | Outer membrane protein ImpK/VasF, OmpA/MotB domain protein | TssL |
17 | PA1R_gp5249 | 5840349..5843864 [+], 3516 | 558671139 | IcmF-related protein | TssM |
18 | PA1R_gp5250 | 5843864..5844592 [+], 729 | 558671140 | Serine/threonine protein phosphatase | Stp1 |
19 | PA1R_gp5251 | 5844589..5845578 [+], 990 | 558671141 | serine-threonine kinase Stk1 | Stk1 |
20 | PA1R_gp5252 | 5845606..5845986 [-], 381 | 558671142 | Glyoxalase family protein | |
21 | PA1R_gp5253 | 5846232..5846693 [+], 462 | 558671143 | Hemerythrin-like protein | |
22 | PA1R_gp5254 | 5846758..5847303 [-], 546 | 558671144 | GTP cyclohydrolase I | |
23 | PA1R_gp5255 | 5847381..5847938 [-], 558 | 558671145 | Smr domain protein | |
24 | PA1R_gp5256 | 5847995..5848315 [-], 321 | 558671146 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein