SecReT6
I. Summary
SecReT6 ID872 insolico
StrainPseudomonas aeruginosa PA1R
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_022806
Location5824901..5843864
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PA1R_gp52335820660..5821295 [+], 636558671123hypothetical protein 
2PA1R_gp52345821346..5821822 [-], 477558671124Transcriptional regulator, MarR family 
3PA1R_gp52355821943..5823070 [+], 1128558671125Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic-like protein 
4PA1R_gp52365823126..5823728 [+], 603558671126Glutathione S-transferase, unnamed subgroup 
5PA1R_gp52375824901..5826457 [+], 1557558671127Uncharacterized protein ImpA  TssA
6PA1R_gp52385826493..5826999 [+], 507558671128Uncharacterized protein ImpB  TssB
7PA1R_gp52395827028..5828503 [+], 1476558671129Uncharacterized protein ImpC  TssC
8PA1R_gp52405828516..5828923 [+], 408558671130hypothetical protein  TssE
9PA1R_gp52415829261..5831048 [+], 1788558671131Protein ImpG/VasA  TssF
10PA1R_gp52425831012..5832019 [+], 1008558671132Uncharacterized protein ImpH/VasB  TssG
11PA1R_gp52435832032..5834659 [+], 2628558671133ClpB protein  TssH
12PA1R_gp52445834670..5836181 [+], 1512558671134Sigma-54 dependent transcriptional regulator  Sfa2
13PA1R_gp52455836428..5837621 [+], 1194558671135Uncharacterized protein ImpI/VasC  Fha
14PA1R_gp52465837618..5838133 [+], 516558671136Type VI secretion lipoprotein/VasD  TssJ
15PA1R_gp52475838130..5839461 [+], 1332558671137Uncharacterized protein ImpJ/VasE  TssK
16PA1R_gp52485839464..5840333 [+], 870558671138Outer membrane protein ImpK/VasF, OmpA/MotB domain protein  TssL
17PA1R_gp52495840349..5843864 [+], 3516558671139IcmF-related protein  TssM
18PA1R_gp52505843864..5844592 [+], 729558671140Serine/threonine protein phosphatase  Stp1
19PA1R_gp52515844589..5845578 [+], 990558671141serine-threonine kinase Stk1  Stk1
20PA1R_gp52525845606..5845986 [-], 381558671142Glyoxalase family protein 
21PA1R_gp52535846232..5846693 [+], 462558671143Hemerythrin-like protein 
22PA1R_gp52545846758..5847303 [-], 546558671144GTP cyclohydrolase I 
23PA1R_gp52555847381..5847938 [-], 558558671145Smr domain protein 
24PA1R_gp52565847995..5848315 [-], 321558671146hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PA1R_gp32023580494..3581120 [-], 627558669111Secreted protein Hcp PSPTO_5435
2PA1R_gp50935665512..5666030 [-], 519558670983Secreted protein Hcp PSPTO_5435

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU