I. Summary
SecReT6 ID876 insolico
StrainSalmonella enterica subsp. enterica serovar Agona str. 24249
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Q786_050551085409..1085810 [-], 402563652563transposase 
2Q786_050651086091..1086549 [-], 459563652564hypothetical protein 
3Q786_050701086542..1086676 [-], 135563652565hypothetical protein 
4Q786_050751086673..1087044 [-], 372563652566hypothetical protein 
5Q786_050801087053..1087493 [-], 441563652567hypothetical protein 
6Q786_050851087513..1088025 [-], 513563652568hypothetical protein 
7Q786_050901088066..1088512 [-], 447563652569hypothetical protein 
8Q786_051001090128..1090388 [-], 261563652570type VI secretion protein IcmF  TssM
9Q786_051051090957..1091799 [-], 843563652571hypothetical protein 
10Q786_051101091823..1092302 [-], 480563652572Hcp  TssD
11Q786_051151092321..1093682 [-], 1362563652573type VI secretion protein ImpA  TssA
12Q786_051201093693..1097154 [-], 3462563652574type VI secretion protein IcmF  TssM
13Q786_051251097233..1098645 [-], 1413563652575CAD protein  TssA
14Q786_051301098647..1099384 [-], 738563652576type VI secretion protein 
15Q786_051351099381..1102116 [-], 2736563652577protein disaggregation chaperone  TssH
16Q786_051401102129..1102887 [-], 759563652578membrane protein  TssL
17Q786_051451102892..1104223 [-], 1332563652579hypothetical protein  TssK
18Q786_051501104226..1104759 [-], 534563652580hypothetical protein  TssJ
19Q786_051551104756..1106042 [-], 1287563652581type VI secretion system protein ImpI  Fha
20Q786_051601106067..1107155 [-], 1089563652582type VI secretion protein  TssG
21Q786_051651107119..1108972 [-], 1854563652583type VI secretion protein  TssF
22Q786_051701108977..1109393 [-], 417563652584type VI secretion protein  TssE
23Q786_051751109390..1110862 [-], 1473563652585EvpB family type VI secretion protein  TssC
24Q786_051801110911..1111123 [-], 213563652586hypothetical protein  TssC
25Q786_051851111153..1111656 [-], 504563652587hypothetical protein  TssB
26Q786_051901112285..1112803 [+], 519563652588hypothetical protein  TssD
27Q786_051951113026..1115167 [+], 2142563652589type IV secretion protein Rhs  TssI
28Q786_052001115236..1119402 [+], 4167563652590type IV secretion protein Rhs  PAAR
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
idrA , STY2606, ROD_34191

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Q786_051901112285..1112803 [+], 519563652588hypothetical protein idrA
2Q786_117252447281..2447499 [+], 219563653834hypothetical protein STY2606
3Q786_152053172877..3173362 [-], 486563654485hypothetical protein ROD_34191

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Proteins        Genes

Homology Immunity protein list

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Q786_117302447499..2448017 [+], 519563653835hypothetical protein STY2607

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Proteins        Genes