I. Summary

SecReT6 ID	880
Strain	Pseudomonas aeruginosa MTB-1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_023019
Location	4856552..4882755
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	U769_22645	4851929..4853446 [-], 1518	564954403	membrane protein
2	U769_22650	4853722..4855305 [-], 1584	564954404	hypothetical protein
3	U769_22655	4855489..4856550 [-], 1062	564954405	hypothetical protein
4	U769_22660	4856552..4860289 [-], 3738	564954406	type VI secretion protein VasK	TssM
5	U769_22665	4860305..4861747 [-], 1443	564954407	membrane protein	TssA
6	U769_22670	4861735..4862418 [-], 684	564954408	hypothetical protein
7	U769_22675	4862415..4863989 [-], 1575	564954409	Fis family transcriptional regulator
8	U769_22680	4864004..4866571 [-], 2568	564954410	ATPase AAA	TssH
9	U769_22685	4867057..4867560 [+], 504	564954411	hypothetical protein	TssB
10	U769_22690	4867748..4869229 [+], 1482	564954412	type VI secretion protein	TssC
11	U769_22695	4869238..4869666 [+], 429	564954413	hypothetical protein	TssE
12	U769_22700	4869688..4871454 [+], 1767	564954414	type VI secretion protein	TssF
13	U769_22705	4871418..4872437 [+], 1020	564954415	type VI secretion protein	TssG
14	U769_22710	4872434..4873798 [+], 1365	564954416	hypothetical protein	Fha
15	U769_22715	4873798..4874817 [+], 1020	564954417	hypothetical protein	TssJ
16	U769_22720	4874814..4876151 [+], 1338	564954418	type VI secretion protein	TssK
17	U769_22725	4876153..4877052 [+], 900	564954419	hypothetical protein	TssL
18	U769_22730	4877186..4878007 [+], 822	564954420	dCMP deaminase
19	U769_22735	4878098..4879540 [-], 1443	564954421	hypothetical protein
20	U769_22740	4880092..4880610 [+], 519	564954422	hypothetical protein	TssD
21	U769_22745	4880710..4882755 [+], 2046	564954423	type IV secretion protein Rhs	TssI
22	U769_22750	4882776..4884131 [+], 1356	564954424	hypothetical protein
23	U769_22755	4884133..4884489 [+], 357	564954425	type IV secretion protein Rhs
24	U769_22760	4884494..4885693 [+], 1200	564954426	hypothetical protein
25	U769_22762	4885701..4886150 [+], 450	564954427	hypothetical protein
26	U769_22764	4886205..4887185 [+], 981	564954428	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

idrA

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	U769_22740	4880092..4880610 [+], 519	564954422	hypothetical protein	idrA

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Proteins        Genes

N/A

N/A