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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | P795_RS10875 | 2348876..2350054 [-], 1179 | 565649407 | cyanate transporter | |
2 | P795_RS10880 | 2350054..2350536 [-], 483 | 565649408 | nucleoside deaminase | |
3 | P795_RS10885 | 2350552..2351199 [-], 648 | 1190343326 | ankyrin repeat domain-containing protein | |
4 | P795_RS10890 | 2351372..2352223 [+], 852 | 446382329 | LysR family transcriptional regulator | |
5 | P795_RS10895 | 2352226..2353179 [-], 954 | 446895327 | M15 family metallopeptidase | |
6 | P795_RS10900 | 2353187..2353789 [-], 603 | 445968591 | hypothetical protein | |
7 | P795_RS10905 | 2353802..2354608 [-], 807 | 446005774 | type IVB secretion system protein IcmH/DotU | TssL |
8 | P795_RS10910 (tssK) | 2354626..2355990 [-], 1365 | 446393589 | type VI secretion system baseplate subunit TssK | TssK |
9 | P795_RS10915 (tssA) | 2356007..2357101 [-], 1095 | 445942858 | type VI secretion system protein TssA | TssA |
10 | P795_RS10920 (tssH) | 2357125..2359806 [-], 2682 | 1715526928 | type VI secretion system ATPase TssH | |
11 | P795_RS10925 | 2360026..2360289 [-], 264 | 446090257 | PAAR domain-containing protein | |
12 | P795_RS10930 | 2360306..2361073 [-], 768 | 446995154 | OmpA family protein | |
13 | P795_RS10935 (tagF) | 2361076..2362035 [-], 960 | 446479387 | type VI secretion system-associated protein TagF | |
14 | P795_RS10940 (tssM) | 2362073..2365897 [-], 3825 | 565649411 | type VI secretion system membrane subunit TssM | |
15 | P795_RS10945 | 2365928..2367340 [-], 1413 | 565649412 | hypothetical protein | |
16 | P795_RS10950 (tssG) | 2367337..2368335 [-], 999 | 447113138 | type VI secretion system baseplate subunit TssG | TssG |
17 | P795_RS10955 (tssF) | 2368299..2370110 [-], 1812 | 446490966 | type VI secretion system baseplate subunit TssF | TssF |
18 | P795_RS10960 (tssE) | 2370127..2370603 [-], 477 | 446969775 | type VI secretion system baseplate subunit TssE | TssE |
19 | P795_RS10965 | 2370683..2371186 [-], 504 | 446575849 | type VI secretion system tube protein Hcp | TssD |
20 | P795_RS10970 (tssC) | 2371236..2372717 [-], 1482 | 446989267 | type VI secretion system contractile sheath large subunit | TssC |
21 | P795_RS10975 (tssB) | 2372710..2373213 [-], 504 | 447041786 | type VI secretion system contractile sheath small subunit | TssB |
22 | P795_RS10980 | 2373230..2373922 [-], 693 | 446792455 | hypothetical protein | |
23 | P795_RS10985 | 2374548..2374757 [+], 210 | pseudogene | sulfatase | |
24 | P795_RS10990 | 2374852..2375139 [+], 288 | 763079237 | SUMF1/EgtB/PvdO family nonheme iron enzyme | |
25 | P795_RS10995 | 2375655..2376560 [-], 906 | 565649417 | sel1 repeat family protein | |
26 | P795_RS11000 | 2376572..2377361 [-], 790 | pseudogene | ABC transporter ATP-binding protein | |
27 | P795_RS11005 | 2377365..2378156 [-], 792 | 565649420 | hypothetical protein | |
28 | P795_RS11010 | 2378157..2380934 [-], 2778 | 763079239 | hypothetical protein | |
29 | P795_RS11015 | 2380939..2381877 [-], 939 | 565649424 | hypothetical protein | |
30 | P795_RS11020 | 2381874..2384504 [-], 2631 | pseudogene | type VI secretion system tip protein VgrG | |
31 | P795_RS11025 | 2384650..2385052 [+], 403 | pseudogene | hypothetical protein | |
32 | P795_RS11030 | 2385148..2386092 [+], 945 | 565649428 | ABC transporter permease | |
33 | P795_RS11035 | 2386092..2386973 [+], 882 | 446922836 | ABC transporter ATP-binding protein | |
34 | P795_RS11040 | 2387025..2388047 [-], 1023 | 565649429 | ABC transporter substrate-binding protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein