SecReT6
I. Summary
SecReT6 ID881 insolico
StrainAcinetobacter baumannii ZW85-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023028
Location2353802..2384504
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1P795_RS108752348876..2350054 [-], 1179565649407cyanate transporter 
2P795_RS108802350054..2350536 [-], 483565649408nucleoside deaminase 
3P795_RS108852350552..2351199 [-], 6481190343326ankyrin repeat domain-containing protein 
4P795_RS108902351372..2352223 [+], 852446382329LysR family transcriptional regulator 
5P795_RS108952352226..2353179 [-], 954446895327M15 family metallopeptidase 
6P795_RS109002353187..2353789 [-], 603445968591hypothetical protein 
7P795_RS109052353802..2354608 [-], 807446005774type IVB secretion system protein IcmH/DotU  TssL
8P795_RS10910 (tssK)2354626..2355990 [-], 1365446393589type VI secretion system baseplate subunit TssK  TssK
9P795_RS10915 (tssA)2356007..2357101 [-], 1095445942858type VI secretion system protein TssA  TssA
10P795_RS10920 (tssH)2357125..2359806 [-], 26821715526928type VI secretion system ATPase TssH 
11P795_RS109252360026..2360289 [-], 264446090257PAAR domain-containing protein 
12P795_RS109302360306..2361073 [-], 768446995154OmpA family protein 
13P795_RS10935 (tagF)2361076..2362035 [-], 960446479387type VI secretion system-associated protein TagF 
14P795_RS10940 (tssM)2362073..2365897 [-], 3825565649411type VI secretion system membrane subunit TssM 
15P795_RS109452365928..2367340 [-], 1413565649412hypothetical protein 
16P795_RS10950 (tssG)2367337..2368335 [-], 999447113138type VI secretion system baseplate subunit TssG  TssG
17P795_RS10955 (tssF)2368299..2370110 [-], 1812446490966type VI secretion system baseplate subunit TssF  TssF
18P795_RS10960 (tssE)2370127..2370603 [-], 477446969775type VI secretion system baseplate subunit TssE  TssE
19P795_RS109652370683..2371186 [-], 504446575849type VI secretion system tube protein Hcp  TssD
20P795_RS10970 (tssC)2371236..2372717 [-], 1482446989267type VI secretion system contractile sheath large subunit  TssC
21P795_RS10975 (tssB)2372710..2373213 [-], 504447041786type VI secretion system contractile sheath small subunit  TssB
22P795_RS109802373230..2373922 [-], 693446792455hypothetical protein 
23P795_RS109852374548..2374757 [+], 210pseudogenesulfatase 
24P795_RS109902374852..2375139 [+], 288763079237SUMF1/EgtB/PvdO family nonheme iron enzyme 
25P795_RS109952375655..2376560 [-], 906565649417sel1 repeat family protein 
26P795_RS110002376572..2377361 [-], 790pseudogeneABC transporter ATP-binding protein 
27P795_RS110052377365..2378156 [-], 792565649420hypothetical protein 
28P795_RS110102378157..2380934 [-], 2778763079239hypothetical protein 
29P795_RS110152380939..2381877 [-], 939565649424hypothetical protein 
30P795_RS110202381874..2384504 [-], 2631pseudogenetype VI secretion system tip protein VgrG 
31P795_RS110252384650..2385052 [+], 403pseudogenehypothetical protein 
32P795_RS110302385148..2386092 [+], 945565649428ABC transporter permease 
33P795_RS110352386092..2386973 [+], 882446922836ABC transporter ATP-binding protein 
34P795_RS110402387025..2388047 [-], 1023565649429ABC transporter substrate-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU