SecReT6
I. Summary
SecReT6 ID882 insolico
StrainFrancisella noatunensis subsp. orientalis LADL--07-285A
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023029
Location1358765..1379448
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number10011111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M973_075501358765..1361227 [+], 2463565642691pathogenicity deteminant protein pdpA  PdpA
2M973_075551361231..1364500 [+], 3270565642692ribosomal L29e protein family  PdpB
3M973_075601364490..1364867 [+], 378565642693hypothetical protein  IglE
4M973_075651364880..1365374 [+], 495565642694vgrG protein  VgrG
5M973_075701365380..1367092 [+], 1713565642695DNA polymerase I  IglF
6M973_075751367092..1367613 [+], 522565642696hypothetical protein  IglG
7M973_075801367625..1369052 [+], 1428565642697hypothetical protein  IglH
8M973_075851369067..1369687 [+], 621565642698developmental protein  DotU
9M973_075901369702..1370898 [+], 1197565642699phage tail protein  IglI
10M973_075951370916..1371563 [+], 648565642700hypothetical protein  IglJ
11M973_076001371647..1372843 [-], 1197565642701intracellular growth locus protein D  IglD
12M973_076051372867..1373496 [-], 630565642702intracellular growth locus protein C  IglC
13M973_076101373514..1375034 [-], 1521565642703intracellular growth locus protein B  IglB
14M973_076151375068..1375610 [-], 543565642704intracellular growth locus protein A  IglA
15M973_076201375678..1379448 [-], 3771565642705Pathogenicity determinant protein D  PdpD
16M973_076251379493..1380638 [-], 1146565642706anhydro-N-acetylmuramic acid kinase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTN_1312

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M973_075651364880..1365374 [+], 495565642694vgrG protein FTN_1312

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Proteins        Genes
N/A
N/A