I. Summary

SecReT6 ID	885
Strain	Pseudomonas sp. TKP
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_023064
Location	4153253..4172407
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	U771_18855	4148977..4151052 [-], 2076	568140714	PTS sugar transporter subunit IIC
2	U771_18860	4151355..4151684 [+], 330	568140715	DNA repair ATPase
3	U771_18865	4151692..4152528 [-], 837	568140716	serine/threonine protein kinase	Stk1
4	U771_18870	4152525..4153256 [-], 732	568140717	protein phosphatase	Stp1
5	U771_18875	4153253..4156615 [-], 3363	568140718	type VI secretion protein VasK	TssM
6	U771_18880	4156631..4157497 [-], 867	568140719	OmpA family protein	TssL
7	U771_18885	4157503..4158831 [-], 1329	568140720	type VI secretion protein	TssK
8	U771_18890	4158833..4159327 [-], 495	568140721	type VI secretion protein	TssJ
9	U771_18895	4159324..4160514 [-], 1191	568140722	signal peptide protein	Fha
10	U771_18900	4160530..4160661 [-], 132	568140723	type VI secretion protein
11	U771_18905	4160689..4162215 [-], 1527	568140724	Fis family transcriptional regulator	Sfa2
12	U771_18910	4162212..4164650 [-], 2439	568140725	ATPase AAA	TssH
13	U771_18915	4164663..4165670 [-], 1008	568140726	type VI secretion protein	TssG
14	U771_18920	4165634..4167421 [-], 1788	568140727	type VI secretion protein	TssF
15	U771_18925	4167411..4167812 [-], 402	568140728	hypothetical protein	TssE
16	U771_18930	4167827..4169302 [-], 1476	568140729	type VI secretion protein	TssC
17	U771_18935	4169329..4169826 [-], 498	568140730	hypothetical protein	TssB
18	U771_18940	4169861..4171330 [-], 1470	568140731	type VI secretion protein ImpA	TssA
19	U771_18945	4171892..4172407 [+], 516	568140732	hypothetical protein	TssD
20	U771_18950	4172461..4173282 [-], 822	568140733	hypothetical protein
21	U771_18955	4173389..4173883 [+], 495	568140734	hypothetical protein
22	U771_18960	4173965..4175176 [-], 1212	568140735	membrane protein
23	U771_18965	4175290..4176099 [-], 810	568140736	diaminopimelate epimerase
24	U771_18970	4176178..4176696 [+], 519	568140737	adenylylsulfate kinase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

PSPTO_5435

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	U771_18945	4171892..4172407 [+], 516	568140732	hypothetical protein	PSPTO_5435

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Proteins        Genes

N/A

N/A