I. Summary

SecReT6 ID	886
Strain	Pseudomonas sp. TKP
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_023064
Location	6792971..6813378
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	U771_31070	6788593..6791604 [-], 3012	568143103	serine/threonine protein kinase	PpkA
2	U771_31075	6791601..6792320 [-], 720	568143104	PppA	PppA
3	U771_31080	6792321..6792974 [-], 654	568143105	type VI secretion system protein ImpM	TagF
4	U771_31085	6792971..6796471 [-], 3501	568143106	type VI secretion protein IcmF	TssM
5	U771_31090	6796468..6797757 [-], 1290	568143107	type VI secretion protein	TssL
6	U771_31095	6797764..6799098 [-], 1335	568143108	type VI secretion protein	TssK
7	U771_31100	6799117..6799626 [-], 510	568143109	type VI secretion protein	TssJ
8	U771_31105	6799678..6801033 [-], 1356	568143110	type VI secretion protein	Fha
9	U771_31110	6801428..6802447 [+], 1020	568143111	type VI secretion protein ImpA	TssA
10	U771_31115	6802502..6803008 [+], 507	568143112	hypothetical protein	TssB
11	U771_31120	6803011..6804507 [+], 1497	568143113	EvpB family type VI secretion protein	TssC
12	U771_31125	6804683..6805171 [+], 489	568143114	hypothetical protein	TssD
13	U771_31130	6805262..6805780 [+], 519	568143115	hypothetical protein	TssE
14	U771_31135	6805777..6807636 [+], 1860	568143116	type VI secretion system protein ImpG	TssF
15	U771_31140	6807600..6808643 [+], 1044	568143117	type VI secretion protein	TssG
16	U771_31145	6808636..6811290 [+], 2655	568143118	ATPase AAA	TssH
17	U771_31150	6811438..6813378 [+], 1941	568143119	type VI secretion protein ImpA	TssI
18	U771_31155	6813394..6813828 [+], 435	568143120	hypothetical protein
19	U771_31160	6813841..6818295 [+], 4455	568143121	type IV secretion protein Rhs	PAAR

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

PA0085 , PA0091

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	U771_31125	6804683..6805171 [+], 489	568143114	hypothetical protein	PA0085
2	U771_31150	6811438..6813378 [+], 1941	568143119	type VI secretion protein ImpA	PA0091

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Proteins        Genes

N/A

N/A