SecReT6
I. Summary
SecReT6 ID889 insolico
StrainPseudomonas aeruginosa LES431
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_023066
Location3992816..4011791
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1T223_186853988365..3988685 [+], 321568154799hypothetical protein 
2T223_186903988742..3989299 [+], 558568154800DNA mismatch repair protein MutS 
3T223_186953989377..3989922 [+], 546568154801GTP cyclohydrolase 
4T223_187003989987..3990448 [-], 462568154802hypothetical protein 
5T223_187053990694..3991074 [+], 381568154803hypothetical protein 
6T223_187103991102..3992091 [-], 990568154804serine/threonine protein kinase  Stk1
7T223_187153992088..3992816 [-], 729568154805protein phosphatase  Stp1
8T223_187203992816..3996343 [-], 3528568154806type VI secretion protein VasK  TssM
9T223_187253996359..3997228 [-], 870568154807OmpA family protein  TssL
10T223_187303997231..3998562 [-], 1332568154808type VI secretion protein  TssK
11T223_187353998559..3999065 [-], 507568154809type VI secretion protein  TssJ
12T223_187403999071..4000264 [-], 1194568154810signal peptide protein  Fha
13T223_187454000282..4000422 [-], 141568154811type VI secretion protein 
14T223_187504000511..4002022 [-], 1512568154812Fis family transcriptional regulator  Sfa2
15T223_187554002033..4004660 [-], 2628568154813ATPase AAA  TssH
16T223_187604004673..4005680 [-], 1008568154814type VI secretion protein  TssG
17T223_187654005644..4007431 [-], 1788568154815type VI secretion protein  TssF
18T223_187704007435..4007758 [-], 324568154816type IV secretion protein Rhs  PAAR
19T223_187754007769..4008176 [-], 408568154817hypothetical protein  TssE
20T223_187804008189..4009664 [-], 1476568154818type VI secretion protein  TssC
21T223_187854009693..4010199 [-], 507568154819hypothetical protein  TssB
22T223_187904010235..4011791 [-], 1557568154820type VI secretion protein ImpA  TssA
23T223_187954012963..4013565 [-], 603568154821glutathione S-transferase 
24T223_188004013621..4014787 [-], 1167568154822GntR family transcriptional regulator 
25T223_188054014869..4015345 [+], 477568154823MarR family transcriptional regulator 
26T223_188104015396..4016031 [-], 636568154824hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435, PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1T223_01305289991..290509 [-], 519568151441hypothetical protein PSPTO_5435
2T223_199354255376..4255894 [+], 519568155044hypothetical protein PSPTO_5435
3T223_289456217119..6217637 [-], 519568156796hypothetical protein PSPTO_5435

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU