SecReT6 ID	898
Strain	Klebsiella pneumoniae str. Kp52.145
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	FO834906
Location	3477664..3505840
Comment
Function	N/A
.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	1	1	0	0	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BN49_3348	3472745..3473791 [-], 1047	597516007	-
2	BN49_3349 (ychH)	3474012..3474287 [-], 276	597516008	-
3	BN49_3350 (pth)	3474560..3475144 [+], 585	597516009	-
4	BN49_3351 (engD)	3475262..3476353 [+], 1092	597516010	-
5	BN49_3352	3476436..3476765 [-], 330	597516011	-
6	BN49_3353	3476850..3477137 [-], 288	597516012	-
7	BN49_3354	3477065..3477532 [-], 468	597516013	-
8	BN49_3355	3477664..3479079 [-], 1416	597516014	-	TssA
9	BN49_3356	3479099..3479542 [-], 444	597516015	-	TssE
10	BN49_3357	3479545..3480033 [-], 489	597516016	-	TssJ
11	BN49_3358	3480062..3481153 [-], 1092	597516017	-	TssG
12	BN49_3359	3481108..3482871 [-], 1764	597516018	-	TssF
13	BN49_3360	3483005..3483811 [-], 807	597516019	-	TssM
14	BN49_3361	3483723..3486395 [-], 2673	597516020	-	TssM
15	BN49_3362	3486501..3487646 [-], 1146	597516021	-
16	BN49_3363	3487766..3488029 [-], 264	597516022	-	PAAR
17	BN49_3364	3488119..3489096 [-], 978	597516023	-
18	BN49_3365 (sel1A)	3489311..3490375 [-], 1065	597516024	-
19	BN49_3366 (sel1B)	3490413..3491693 [-], 1281	597516025	-
20	BN49_3367 (sel1C)	3491731..3493002 [-], 1272	597516026	-
21	BN49_3368 (pld)	3493002..3494873 [-], 1872	597516027	-
22	BN49_3369 (sel1D)	3495042..3496115 [-], 1074	597516028	-
23	BN49_3370 (sel1E)	3496153..3497397 [-], 1245	597516029	-
24	BN49_3371	3497427..3497990 [-], 564	597516030	-
25	BN49_3372	3497987..3498940 [-], 954	597516031	-
26	BN49_3373	3498991..3501690 [-], 2700	597516032	-	TssI
27	BN49_3374	3502149..3503846 [-], 1698	597516033	-	TagL
28	BN49_3375	3503850..3504503 [-], 654	597516034	-	TssL
29	BN49_3376	3504500..3505840 [-], 1341	597516035	-	TssK
30	BN49_3377	3506409..3506738 [+], 330	597516036	-
31	BN49_3378	3506853..3507392 [+], 540	597516037	-
32	BN49_3379	3507418..3508209 [-], 792	597516038	-
33	BN49_3380	3508307..3508789 [+], 483	597516039	-
34	BN49_3381	3508899..3509798 [+], 900	597516040	-
35	BN49_3382	3509773..3510582 [-], 810	597516041	-

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Lery LM et al. (2014). Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor. BMC Biol. 12(1):41. [PudMed:24885329]

This literature contains experimental investigation

This literature contains bioinformatics investigation