 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SSON_0221 (dkgB) | 245604..246407 [+], 804 | 74310822 | 2,5-diketo-D-gluconate reductase B | |
2 | SSON_0222 (yafC) | 246404..247318 [-], 915 | 74310823 | LysR family transcriptional regulator | |
3 | SSON_0223 (yafD) | 247559..248359 [+], 801 | 74310824 | hypothetical protein | |
4 | SSON_0224 (yafE) | 248363..248986 [+], 624 | 74310825 | biotin synthesis protein | |
5 | SSON_0225 (mltD) | 249035..250393 [-], 1359 | 74310826 | membrane-bound lytic murein transglycosylase D | |
6 | SSON_0226 (gloB) | 250465..251220 [-], 756 | 74310827 | hydroxyacylglutathione hydrolase | |
7 | SSON_0227 (yafS) | 251236..251976 [+], 741 | 74310828 | hypothetical protein | |
8 | SSON_0228 (rnhA) | 251973..252440 [-], 468 | 74310829 | ribonuclease H | |
9 | SSON_0229 (dnaQ) | 252505..253236 [+], 732 | 74310830 | DNA polymerase III subunit epsilon | |
10 | SSON_0231 (yafT) | 253775..254560 [+], 786 | 74310831 | aminopeptidase | |
11 | SSON_0232 (yafU) | 255186..255524 [-], 339 | 74310832 | hypothetical protein | |
12 | SSON_0233 | 256165..256647 [-], 483 | 74310833 | Hcp-like protein | TssD |
13 | SSON_0234 | 256671..258023 [-], 1353 | 74310834 | hypothetical protein | TssA |
14 | SSON_0235 | 258034..258720 [-], 687 | 74310835 | hypothetical protein | TssM |
15 | SSON_0236 | 258757..259932 [-], 1176 | 74310836 | hypothetical protein | TssM |
16 | SSON_0237 | 259945..260850 [-], 906 | 161986585 | insertion element IS2 transposase InsD | |
17 | SSON_0238 | 260808..261173 [-], 366 | 74310838 | insertion sequence 2 OrfA protein | |
18 | SSON_0239 | 261215..262894 [-], 1680 | 74310839 | hypothetical protein | TssM |
19 | SSON_0240 | 262913..264325 [-], 1413 | 74310840 | hypothetical protein | TssA |
20 | SSON_0241 | 264330..265022 [-], 693 | 74310841 | hypothetical protein | |
21 | SSON_0242 | 265070..267529 [-], 2460 | 74310842 | ATP-dependent Clp proteinase ATP-binding chain | TssH |
22 | SSON_0243 | 267548..267847 [-], 300 | 74310843 | hypothetical protein | |
23 | SSON_0244 | 267856..268617 [-], 762 | 74310844 | hypothetical protein | TssL |
24 | SSON_0245 | 268622..269410 [-], 789 | 74310845 | cytoplasmic protein | TssK |
25 | SSON_0246 | 269403..269912 [-], 510 | 74310846 | hypothetical protein | TssK |
26 | SSON_0247 | 269954..270478 [-], 525 | 74310847 | lipoprotein | TssJ |
27 | SSON_0248 | 270475..271755 [-], 1281 | 74310848 | hypothetical protein | Fha |
28 | SSON_0249 | 271780..272862 [-], 1083 | 74310849 | hypothetical protein | TssG |
29 | SSON_0250 | 272826..274676 [-], 1851 | 74310850 | hypothetical protein | TssF |
30 | SSON_0251 | 275100..275648 [-], 549 | 74310851 | hypothetical protein | TssC |
31 | SSON_0252 | 275685..276575 [-], 891 | 74310852 | cytoplasmic protein | TssC |
32 | SSON_0253 | 276626..276850 [-], 225 | 74310853 | hypothetical protein | |
33 | SSON_0254 | 276885..277385 [-], 501 | 74310854 | hypothetical protein | TssB |
34 | SSON_0255 | 278082..278600 [+], 519 | 74310855 | hemolysin co-regulated protein | TssD |
35 | SSON_0256 (vgrG) | 278810..280951 [+], 2142 | 74310856 | Rhs element protein | TssI |
36 | SSON_0257 | 281027..285235 [+], 4209 | 74310857 | rhs core protein with extension | PAAR |
37 | SSON_0258 | 285247..285696 [+], 450 | 74310858 | hypothetical protein | |
38 | SSON_0259 (ybfL) | 286237..287094 [+], 858 | 74310859 | receptor protein | |
39 | SSON_0260 (yhhI) | 288388..289524 [+], 1137 | 74310860 | receptor | |
40 | SSON_0261 (yafV) | 289566..290336 [-], 771 | 74310861 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein