SecReT6
I. Summary
SecReT6 ID910 experimental
StrainFlavobacterium johnsoniae UW101
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009441
Location3892562..3923100
CommentA T6SS Pathway Exports Antibacterial Effectors; T6SS Mediates Interspecies Bacterial Antagonism;
Functionanti-bacterial; effector translocation
T6SS TypeType iii
experimental Experimental investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number112
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Fjoh_32523890555..3891481 [-], 927146300996anti-FecI sigma factor FecR 
2Fjoh_32533891596..3892153 [-], 558146300997ECF subfamily RNA polymerase sigma-24 factor 
3Fjoh_32543892562..3894397 [-], 1836146300998hypothetical protein  TssF
4Fjoh_32553894891..3895379 [-], 489146300999hypothetical protein 
5Fjoh_32563895387..3895947 [-], 561146301000hypothetical protein  Fti1 (i)
6Fjoh_32573895944..3897596 [-], 1653146301001hypothetical protein  Fte1 (e)
7Fjoh_32583897690..3898187 [-], 498146301002hypothetical protein 
8Fjoh_32593898194..3899840 [-], 1647146301003hypothetical protein 
9Fjoh_32603899844..3901652 [-], 1809146301004Rhs element Vgr protein  VgrG
10Fjoh_32613901691..3902086 [-], 396146301005hypothetical protein  Hcp
11Fjoh_32623902237..3902623 [-], 387146301006hypothetical protein  Hcp
12Fjoh_32633902805..3903236 [-], 432146301007GPW/gp25 family protein  TssE
13Fjoh_32643903250..3903963 [-], 714146301008hypothetical protein 
14Fjoh_32653904022..3904549 [-], 528146301009hypothetical protein 
15Fjoh_32663904650..3906020 [-], 1371146301010hypothetical protein  TssC
16Fjoh_32673906041..3906490 [-], 450146301011hypothetical protein  TssB
17Fjoh_32683906545..3907057 [-], 513146301012hypothetical protein  TssO
18Fjoh_32693907083..3908252 [-], 1170146301013hypothetical protein  TssK
19Fjoh_32703908526..3909506 [-], 981146301014hypothetical protein 
20Fjoh_32713909608..3910762 [-], 1155146301015SH3 type 3 domain-containing protein 
21Fjoh_32723910884..3911552 [-], 669146301016hypothetical protein 
22Fjoh_32733911564..3912304 [-], 741146301017hypothetical protein 
23Fjoh_32743912310..3915042 [-], 2733146301018hypothetical protein  Fjoh_3274 (e)
24Fjoh_32753915054..3915548 [-], 495146301019hypothetical protein 
25Fjoh_32763915601..3916674 [-], 1074146301020hypothetical protein 
26Fjoh_32773916691..3917662 [-], 972146301021hypothetical protein  TssN
27Fjoh_32783917665..3918609 [-], 945146301022hypothetical protein  TssG
28Fjoh_32793918593..3919216 [-], 624146301023NLP/P60 protein 
29Fjoh_32803919581..3920633 [+], 1053146301024PKD domain-containing protein  TssP
30Fjoh_32813920641..3923100 [+], 2460146301025ATPase  ClpV
31Fjoh_32823923199..3923477 [-], 279146301026hypothetical protein 
32Fjoh_32833923481..3925880 [-], 2400146301027sulfatase 
33Fjoh_32843925903..3927384 [-], 1482146301028hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Fjoh_3257 (Fte1) , Fjoh_3260, Fjoh_3262, Fjoh_3274

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Fjoh_32573895944..3897596 [-], 1653146301001hypothetical protein (Fte1)Fjoh_3257 (Fte1)
2Fjoh_32603899844..3901652 [-], 1809146301004Rhs element Vgr protein Fjoh_3260
3Fjoh_32623902237..3902623 [-], 387146301006hypothetical protein Fjoh_3262
4Fjoh_32743912310..3915042 [-], 2733146301018hypothetical protein Fjoh_3274
Data from experimental literature

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Proteins        Genes

Homology Immunity protein list
Fjoh_3256 (Fti1)

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Fjoh_32563895387..3895947 [-], 561146301000hypothetical protein (Fti1)Fjoh_3256 (Fti1)
Data from experimental literature

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Proteins        Genes
(1) Russell AB et al. (2014). A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism. Cell Host Microbe. 16(2):227-36. [PudMed:25070807] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation