I. Summary

SecReT6 ID	911
Strain	Dyadobacter fermentans DSM 18053
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_013037
Location	4367450..4388679
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	1	1	1	1	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	0	0	3

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Dfer_3570	4364071..4365003 [+], 933	255037322	hypothetical protein
2	Dfer_3571	4365094..4366212 [+], 1119	255037323	peptidase S58 DmpA
3	Dfer_3572	4366448..4367098 [+], 651	255037324	LuxR family transcriptional regulator
4	Dfer_3574	4367450..4368613 [+], 1164	255037325	hypothetical protein	TssK
5	Dfer_3575	4368617..4369564 [+], 948	255037326	hypothetical protein
6	Dfer_3576	4369600..4372074 [+], 2475	255037327	ATPase AAA-2 domain-containing protein	ClpV
7	Dfer_3577	4372117..4372584 [+], 468	255037328	hypothetical protein
8	Dfer_3578	4372628..4373467 [+], 840	255037329	hypothetical protein
9	Dfer_3579	4373511..4374659 [+], 1149	255037330	fibronectin type III domain-containing protein
10	Dfer_3580	4374705..4375529 [+], 825	255037331	hypothetical protein
11	Dfer_3581	4375534..4376649 [+], 1116	255037332	hypothetical protein
12	Dfer_3582	4376646..4377746 [+], 1101	255037333	OmpA/MotB domain-containing protein	TagL
13	Dfer_3583	4377751..4378773 [+], 1023	255037334	hypothetical protein
14	Dfer_3584	4378889..4379143 [+], 255	255037335	PAAR repeat-containing protein	PAAR
15	Dfer_3585	4379176..4379625 [+], 450	255037336	hypothetical protein	TssB
16	Dfer_3586	4379843..4381210 [+], 1368	255037337	hypothetical protein	TssC
17	Dfer_3587	4381322..4381729 [+], 408	255037338	hypothetical protein	Hcp
18	Dfer_3588	4381733..4382233 [+], 501	255037339	hypothetical protein	Hcp
19	Dfer_3589	4382234..4384072 [+], 1839	255037340	Rhs element Vgr protein	VgrG
20	Dfer_3590	4384119..4384535 [+], 417	255037341	hypothetical protein	Hcp
21	Dfer_3591	4384638..4385405 [-], 768	255037342	hypothetical protein	TssN
22	Dfer_3592	4385483..4385911 [+], 429	255037343	GPW/gp25 family protein	TssE
23	Dfer_3593	4385913..4387718 [+], 1806	255037344	hypothetical protein	TssF
24	Dfer_3594	4387789..4388679 [+], 891	255037345	hypothetical protein	TssG
25	Dfer_3595	4388987..4389340 [+], 354	255037346	hypothetical protein
26	Dfer_3596	4389466..4392456 [+], 2991	255037347	bifunctional preprotein translocase subunit SecD/SecF

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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