SecReT6
I. Summary
SecReT6 ID911 insolico
StrainDyadobacter fermentans DSM 18053
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013037
Location4367450..4388679
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number003
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Dfer_35704364071..4365003 [+], 933255037322hypothetical protein 
2Dfer_35714365094..4366212 [+], 1119255037323peptidase S58 DmpA 
3Dfer_35724366448..4367098 [+], 651255037324LuxR family transcriptional regulator 
4Dfer_35744367450..4368613 [+], 1164255037325hypothetical protein  TssK
5Dfer_35754368617..4369564 [+], 948255037326hypothetical protein 
6Dfer_35764369600..4372074 [+], 2475255037327ATPase AAA-2 domain-containing protein  ClpV
7Dfer_35774372117..4372584 [+], 468255037328hypothetical protein 
8Dfer_35784372628..4373467 [+], 840255037329hypothetical protein 
9Dfer_35794373511..4374659 [+], 1149255037330fibronectin type III domain-containing protein 
10Dfer_35804374705..4375529 [+], 825255037331hypothetical protein 
11Dfer_35814375534..4376649 [+], 1116255037332hypothetical protein 
12Dfer_35824376646..4377746 [+], 1101255037333OmpA/MotB domain-containing protein  TagL
13Dfer_35834377751..4378773 [+], 1023255037334hypothetical protein 
14Dfer_35844378889..4379143 [+], 255255037335PAAR repeat-containing protein  PAAR
15Dfer_35854379176..4379625 [+], 450255037336hypothetical protein  TssB
16Dfer_35864379843..4381210 [+], 1368255037337hypothetical protein  TssC
17Dfer_35874381322..4381729 [+], 408255037338hypothetical protein  Hcp
18Dfer_35884381733..4382233 [+], 501255037339hypothetical protein  Hcp
19Dfer_35894382234..4384072 [+], 1839255037340Rhs element Vgr protein  VgrG
20Dfer_35904384119..4384535 [+], 417255037341hypothetical protein  Hcp
21Dfer_35914384638..4385405 [-], 768255037342hypothetical protein  TssN
22Dfer_35924385483..4385911 [+], 429255037343GPW/gp25 family protein  TssE
23Dfer_35934385913..4387718 [+], 1806255037344hypothetical protein  TssF
24Dfer_35944387789..4388679 [+], 891255037345hypothetical protein  TssG
25Dfer_35954388987..4389340 [+], 354255037346hypothetical protein 
26Dfer_35964389466..4392456 [+], 2991255037347bifunctional preprotein translocase subunit SecD/SecF 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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