I. Summary

SecReT6 ID	912
Strain	Chitinophaga pinensis DSM 2588
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_013132
Location	2833322..2847753
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	0	1	1	1	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Cpin_2297	2830002..2830805 [+], 804	256421336	hypothetical protein
2	Cpin_2298	2830910..2831842 [-], 933	256421337	AraC family transcriptional regulator
3	Cpin_2299	2831949..2832803 [+], 855	256421338	AraC family transcriptional regulator
4	Cpin_2300	2833322..2835772 [+], 2451	256421339	ATPase AAA	ClpV
5	Cpin_2301	2835829..2836275 [+], 447	256421340	hypothetical protein	TssB
6	Cpin_2302	2836461..2837837 [+], 1377	256421341	hypothetical protein	TssC
7	Cpin_2303	2837925..2838812 [+], 888	256421342	hypothetical protein
8	Cpin_2304	2838824..2839900 [+], 1077	256421343	lytic transglycosylase
9	Cpin_2305	2840091..2841923 [-], 1833	256421344	hypothetical protein	TssF
10	Cpin_2306	2841933..2842364 [-], 432	256421345	GPW/gp25 family protein	TssE
11	Cpin_2307	2842383..2843453 [-], 1071	256421346	PKD domain-containing protein	TssP
12	Cpin_2308	2843606..2844559 [+], 954	256421347	hypothetical protein	TssG
13	Cpin_2309	2844636..2845496 [+], 861	256421348	hypothetical protein	TssN
14	Cpin_2310	2845542..2846717 [+], 1176	256421349	hypothetical protein	TssK
15	Cpin_2311	2846740..2847252 [+], 513	256421350	hypothetical protein	TssO
16	Cpin_2312	2847367..2847753 [+], 387	256421351	hypothetical protein	Hcp
17	Cpin_2313	2847971..2848360 [-], 390	256421352	hypothetical protein
18	Cpin_2314	2848374..2848907 [-], 534	256421353	hypothetical protein
19	Cpin_2315	2849075..2849521 [+], 447	256421354	hypothetical protein
20	Cpin_2316	2849514..2850089 [-], 576	256421355	Crp/Fnr family transcriptional regulator
21	Cpin_2317	2850105..2851046 [-], 942	256421356	pantothenate kinase
22	Cpin_2318	2851095..2852453 [-], 1359	256421357	aldehyde dehydrogenase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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