SecReT6
I. Summary
SecReT6 ID912 insolico
StrainChitinophaga pinensis DSM 2588
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013132
Location2833322..2847753
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number011111111
ComponentTssOTssPHcp
Number111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Cpin_22972830002..2830805 [+], 804256421336hypothetical protein 
2Cpin_22982830910..2831842 [-], 933256421337AraC family transcriptional regulator 
3Cpin_22992831949..2832803 [+], 855256421338AraC family transcriptional regulator 
4Cpin_23002833322..2835772 [+], 2451256421339ATPase AAA  ClpV
5Cpin_23012835829..2836275 [+], 447256421340hypothetical protein  TssB
6Cpin_23022836461..2837837 [+], 1377256421341hypothetical protein  TssC
7Cpin_23032837925..2838812 [+], 888256421342hypothetical protein 
8Cpin_23042838824..2839900 [+], 1077256421343lytic transglycosylase 
9Cpin_23052840091..2841923 [-], 1833256421344hypothetical protein  TssF
10Cpin_23062841933..2842364 [-], 432256421345GPW/gp25 family protein  TssE
11Cpin_23072842383..2843453 [-], 1071256421346PKD domain-containing protein  TssP
12Cpin_23082843606..2844559 [+], 954256421347hypothetical protein  TssG
13Cpin_23092844636..2845496 [+], 861256421348hypothetical protein  TssN
14Cpin_23102845542..2846717 [+], 1176256421349hypothetical protein  TssK
15Cpin_23112846740..2847252 [+], 513256421350hypothetical protein  TssO
16Cpin_23122847367..2847753 [+], 387256421351hypothetical protein  Hcp
17Cpin_23132847971..2848360 [-], 390256421352hypothetical protein 
18Cpin_23142848374..2848907 [-], 534256421353hypothetical protein 
19Cpin_23152849075..2849521 [+], 447256421354hypothetical protein 
20Cpin_23162849514..2850089 [-], 576256421355Crp/Fnr family transcriptional regulator 
21Cpin_23172850105..2851046 [-], 942256421356pantothenate kinase 
22Cpin_23182851095..2852453 [-], 1359256421357aldehyde dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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