SecReT6
I. Summary
SecReT6 ID913 insolico
StrainChitinophaga pinensis DSM 2588
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013132
Location6081250..6099923
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number111
12
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Cpin_48576077161..6078570 [+], 1410256423839sialate O-acetylesterase 
2Cpin_48586078669..6079508 [-], 840256423840response regulator receiver protein 
3Cpin_48596079548..6080489 [-], 942256423841alcohol dehydrogenase zinc-binding domain-containing protein 
4Cpin_48606080692..6081231 [-], 540256423842hypothetical protein 
5Cpin_48616081250..6081771 [-], 522256423843hypothetical protein  TssO
6Cpin_48626081865..6083031 [-], 1167256423844Hedgehog/intein hint domain-containing protein 
7Cpin_48636083031..6083834 [-], 804256423845hypothetical protein 
8Cpin_48646083839..6085638 [-], 1800256423846Rhs element Vgr protein  VgrG
9Cpin_48656085660..6086394 [-], 735256423847hypothetical protein 
10Cpin_48666086430..6087581 [-], 1152256423848hypothetical protein  TssK
11Cpin_48676087597..6088490 [-], 894256423849hypothetical protein  TssN
12Cpin_48686088517..6089458 [-], 942256423850hypothetical protein  TssG
13Cpin_48696089469..6091313 [-], 1845256423851hypothetical protein  TssF
14Cpin_48706091335..6091769 [-], 435256423852GPW/gp25 family protein  TssE
15Cpin_48716091845..6092237 [-], 393256423853hypothetical protein  Hcp
16Cpin_48726092280..6093650 [-], 1371256423854hypothetical protein  TssC
17Cpin_48736093681..6094127 [-], 447256423855hypothetical protein  TssB
18Cpin_48746094159..6096630 [-], 2472256423856ATPase AAA  ClpV
19Cpin_48756096639..6098975 [-], 2337256423857hypothetical protein 
20Cpin_48766098982..6099923 [-], 942256423858PKD domain-containing protein  TssP
21Cpin_48776099970..6100464 [-], 495256423859hypothetical protein 
22Cpin_48786100686..6102122 [+], 1437256423860ErfK/YbiS/YcfS/YnhG family protein 
23Cpin_48796102277..6103317 [+], 1041256423861alcohol dehydrogenase GroES domain-containing protein 
24Cpin_48806103477..6103923 [-], 447256423862pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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