SecReT6
I. Summary
SecReT6 ID914 insolico
StrainSpirosoma linguale DSM 74
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013730
Location4932530..4967262
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number122211111
ComponentTssOTssPHcp
Number212
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Slin_40924928189..4929376 [+], 1188284038948hypothetical protein 
2Slin_40934929428..4930318 [+], 891284038949family 2 glycosyl transferase 
3Slin_40944930395..4930862 [-], 468284038950hypothetical protein 
4Slin_40954930927..4931142 [-], 216284038951hypothetical protein 
5Slin_40964931139..4931633 [-], 495284038952hypothetical protein 
6Slin_40974931635..4932492 [-], 858284038953OmpA/MotB domain-containing protein  TagL
7Slin_40984932530..4933816 [-], 1287284038954hypothetical protein  TssC
8Slin_40994934280..4934738 [-], 459284038955hypothetical protein  TssB
9Slin_41004934905..4937391 [-], 2487284038956ATPase AAA  ClpV
10Slin_41014937415..4939910 [-], 2496284038957hypothetical protein 
11Slin_41024939907..4940794 [-], 888284038958PKD domain-containing protein  TssP
12Slin_41034940800..4941324 [-], 525284038959hypothetical protein  TssO
13Slin_41044941348..4941839 [-], 492284038960hypothetical protein  TssO
14Slin_41054941909..4942853 [+], 945284038961hypothetical protein  TssG
15Slin_41064942870..4944546 [-], 1677284038962hypothetical protein 
16Slin_41074944556..4946451 [-], 1896284038963hypothetical protein  TssF
17Slin_41084946495..4946929 [-], 435284038964GPW/gp25 family protein  TssE
18Slin_41094947115..4948845 [+], 1731284038965Rhs element Vgr protein  VgrG
19Slin_41104948881..4950137 [+], 1257284038966hypothetical protein 
20Slin_41114950224..4953193 [+], 2970284038967Rhs family protein-like protein 
21Slin_41124953087..4954241 [-], 1155284038968hypothetical protein  TssK
22Slin_41134954248..4955126 [-], 879284038969hypothetical protein  TssN
23Slin_41144955178..4955468 [-], 291284038970hypothetical protein  PAAR
24Slin_41154955659..4962495 [-], 6837284038971hypothetical protein 
25Slin_41164962895..4963353 [+], 459284038972hypothetical protein  TssB
26Slin_41174963405..4964775 [+], 1371284038973hypothetical protein  TssC
27Slin_41184964834..4965232 [+], 399284038974hypothetical protein  Hcp
28Slin_41194965261..4965677 [+], 417284038975hypothetical protein  Hcp
29Slin_41204965862..4967262 [+], 1401284038976ATPase AAA  ClpV
30Slin_41214967821..4968636 [+], 816284038977hypothetical protein 
31Slin_41224969329..4970054 [+], 726284038978hypothetical protein 
32Slin_41234970894..4972009 [+], 1116284038979hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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