I. Summary

SecReT6 ID	914
Strain	Spirosoma linguale DSM 74
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_013730
Location	4932530..4967262
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	1	2	2	2	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	2	1	2

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Slin_4092	4928189..4929376 [+], 1188	284038948	hypothetical protein
2	Slin_4093	4929428..4930318 [+], 891	284038949	family 2 glycosyl transferase
3	Slin_4094	4930395..4930862 [-], 468	284038950	hypothetical protein
4	Slin_4095	4930927..4931142 [-], 216	284038951	hypothetical protein
5	Slin_4096	4931139..4931633 [-], 495	284038952	hypothetical protein
6	Slin_4097	4931635..4932492 [-], 858	284038953	OmpA/MotB domain-containing protein	TagL
7	Slin_4098	4932530..4933816 [-], 1287	284038954	hypothetical protein	TssC
8	Slin_4099	4934280..4934738 [-], 459	284038955	hypothetical protein	TssB
9	Slin_4100	4934905..4937391 [-], 2487	284038956	ATPase AAA	ClpV
10	Slin_4101	4937415..4939910 [-], 2496	284038957	hypothetical protein
11	Slin_4102	4939907..4940794 [-], 888	284038958	PKD domain-containing protein	TssP
12	Slin_4103	4940800..4941324 [-], 525	284038959	hypothetical protein	TssO
13	Slin_4104	4941348..4941839 [-], 492	284038960	hypothetical protein	TssO
14	Slin_4105	4941909..4942853 [+], 945	284038961	hypothetical protein	TssG
15	Slin_4106	4942870..4944546 [-], 1677	284038962	hypothetical protein
16	Slin_4107	4944556..4946451 [-], 1896	284038963	hypothetical protein	TssF
17	Slin_4108	4946495..4946929 [-], 435	284038964	GPW/gp25 family protein	TssE
18	Slin_4109	4947115..4948845 [+], 1731	284038965	Rhs element Vgr protein	VgrG
19	Slin_4110	4948881..4950137 [+], 1257	284038966	hypothetical protein
20	Slin_4111	4950224..4953193 [+], 2970	284038967	Rhs family protein-like protein
21	Slin_4112	4953087..4954241 [-], 1155	284038968	hypothetical protein	TssK
22	Slin_4113	4954248..4955126 [-], 879	284038969	hypothetical protein	TssN
23	Slin_4114	4955178..4955468 [-], 291	284038970	hypothetical protein	PAAR
24	Slin_4115	4955659..4962495 [-], 6837	284038971	hypothetical protein
25	Slin_4116	4962895..4963353 [+], 459	284038972	hypothetical protein	TssB
26	Slin_4117	4963405..4964775 [+], 1371	284038973	hypothetical protein	TssC
27	Slin_4118	4964834..4965232 [+], 399	284038974	hypothetical protein	Hcp
28	Slin_4119	4965261..4965677 [+], 417	284038975	hypothetical protein	Hcp
29	Slin_4120	4965862..4967262 [+], 1401	284038976	ATPase AAA	ClpV
30	Slin_4121	4967821..4968636 [+], 816	284038977	hypothetical protein
31	Slin_4122	4969329..4970054 [+], 726	284038978	hypothetical protein
32	Slin_4123	4970894..4972009 [+], 1116	284038979	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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