SecReT6
I. Summary
SecReT6 ID915 insolico
StrainCellulophaga algicola DSM 14237
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014934
Location4278907..4313256
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number142
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Celal_37384277566..4278900 [-], 1335319955218hypothetical protein 
2Celal_37394278907..4280688 [-], 1782319955219rhs element vgr protein  VgrG
3Celal_37404280786..4282648 [-], 1863319955220hypothetical protein  TssF
4Celal_37414282663..4283094 [-], 432319955221gpw/gp25 family protein  TssE
5Celal_37424283106..4285571 [-], 2466319955222ATPase aaa-2 domain protein  ClpV
6Celal_37434285574..4286086 [-], 513319955223hypothetical protein  TssO
7Celal_37444286098..4287240 [-], 1143319955224hypothetical protein  TssK
8Celal_37454287249..4288070 [-], 822319955225hypothetical protein  TssN
9Celal_37464288121..4289029 [-], 909319955226hypothetical protein  TssG
10Celal_37474289034..4289657 [-], 624319955227nlp/p60 protein 
11Celal_37484289722..4290747 [+], 1026319955228pkd domain containing protein  TssP
12Celal_37494290904..4291290 [+], 387319955229hypothetical protein  Hcp
13Celal_37504291419..4291868 [+], 450319955230hypothetical protein  TssB
14Celal_37514291884..4293242 [+], 1359319955231hypothetical protein  TssC
15Celal_37524293401..4293790 [+], 390319955232hypothetical protein  Hcp
16Celal_37534293841..4294719 [+], 879319955233hypothetical protein 
17Celal_37544294719..4295102 [+], 384319955234hypothetical protein 
18Celal_37554295681..4295947 [+], 267319955235hypothetical protein 
19Celal_37564296264..4297256 [+], 993319955236hypothetical protein 
20Celal_37574297253..4297789 [+], 537319955237hypothetical protein 
21Celal_37584297799..4300141 [+], 2343319955238hypothetical protein 
22Celal_37594300150..4302813 [+], 2664319955239pkd domain containing protein  TssP
23Celal_37604302889..4305825 [+], 2937319955240pkd domain containing protein  TssP
24Celal_37614305861..4310348 [+], 4488319955241hypothetical protein 
25Celal_37624310578..4313256 [+], 2679319955242pkd domain containing protein  TssP
26Celal_37634313249..4315354 [-], 2106319955243ATP-dependent DNA helicase recg 
27Celal_37644315435..4317525 [+], 2091319955244peptidase m1 membrane alanine aminopeptidase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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