I. Summary

SecReT6 ID	915
Strain	Cellulophaga algicola DSM 14237
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_014934
Location	4278907..4313256
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	1	1	1	1	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	1	4	2

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Celal_3738	4277566..4278900 [-], 1335	319955218	hypothetical protein
2	Celal_3739	4278907..4280688 [-], 1782	319955219	rhs element vgr protein	VgrG
3	Celal_3740	4280786..4282648 [-], 1863	319955220	hypothetical protein	TssF
4	Celal_3741	4282663..4283094 [-], 432	319955221	gpw/gp25 family protein	TssE
5	Celal_3742	4283106..4285571 [-], 2466	319955222	ATPase aaa-2 domain protein	ClpV
6	Celal_3743	4285574..4286086 [-], 513	319955223	hypothetical protein	TssO
7	Celal_3744	4286098..4287240 [-], 1143	319955224	hypothetical protein	TssK
8	Celal_3745	4287249..4288070 [-], 822	319955225	hypothetical protein	TssN
9	Celal_3746	4288121..4289029 [-], 909	319955226	hypothetical protein	TssG
10	Celal_3747	4289034..4289657 [-], 624	319955227	nlp/p60 protein
11	Celal_3748	4289722..4290747 [+], 1026	319955228	pkd domain containing protein	TssP
12	Celal_3749	4290904..4291290 [+], 387	319955229	hypothetical protein	Hcp
13	Celal_3750	4291419..4291868 [+], 450	319955230	hypothetical protein	TssB
14	Celal_3751	4291884..4293242 [+], 1359	319955231	hypothetical protein	TssC
15	Celal_3752	4293401..4293790 [+], 390	319955232	hypothetical protein	Hcp
16	Celal_3753	4293841..4294719 [+], 879	319955233	hypothetical protein
17	Celal_3754	4294719..4295102 [+], 384	319955234	hypothetical protein
18	Celal_3755	4295681..4295947 [+], 267	319955235	hypothetical protein
19	Celal_3756	4296264..4297256 [+], 993	319955236	hypothetical protein
20	Celal_3757	4297253..4297789 [+], 537	319955237	hypothetical protein
21	Celal_3758	4297799..4300141 [+], 2343	319955238	hypothetical protein
22	Celal_3759	4300150..4302813 [+], 2664	319955239	pkd domain containing protein	TssP
23	Celal_3760	4302889..4305825 [+], 2937	319955240	pkd domain containing protein	TssP
24	Celal_3761	4305861..4310348 [+], 4488	319955241	hypothetical protein
25	Celal_3762	4310578..4313256 [+], 2679	319955242	pkd domain containing protein	TssP
26	Celal_3763	4313249..4315354 [-], 2106	319955243	ATP-dependent DNA helicase recg
27	Celal_3764	4315435..4317525 [+], 2091	319955244	peptidase m1 membrane alanine aminopeptidase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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