I. Summary

SecReT6 ID	916
Strain	Bacteroides salanitronis DSM 1817
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_015164
Location	1220080..1242528
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	1	1	1	1	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	2	1	6

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Bacsa_1065	1215319..1215672 [-], 354	325298209	hypothetical protein
2	Bacsa_1066	1215679..1219998 [-], 4320	325298210	RHS repeat-associated core domain
3	Bacsa_1067	1220080..1221447 [-], 1368	325298211	hypothetical protein	TssC
4	Bacsa_1068	1221453..1221926 [-], 474	325298212	hypothetical protein	TssB
5	Bacsa_1069	1221972..1223330 [-], 1359	325298213	hypothetical protein
6	Bacsa_1070	1223342..1225153 [-], 1812	325298214	Rhs element Vgr protein	VgrG
7	Bacsa_1071	1225273..1225671 [-], 399	325298215	hypothetical protein	Hcp
8	Bacsa_1072	1225935..1228415 [+], 2481	325298216	ATPase AAA-2 domain-containing protein	ClpV
9	Bacsa_1073	1228430..1228852 [+], 423	325298217	hypothetical protein	Hcp
10	Bacsa_1074	1228866..1229282 [+], 417	325298218	hypothetical protein	Hcp
11	Bacsa_1075	1229285..1230145 [+], 861	325298219	hypothetical protein
12	Bacsa_1076	1230142..1230504 [+], 363	325298220	hypothetical protein
13	Bacsa_1077	1230512..1230805 [+], 294	325298221	hypothetical protein
14	Bacsa_1078	1230820..1231224 [+], 405	325298222	hypothetical protein	Hcp
15	Bacsa_1079	1231221..1231661 [+], 441	325298223	hypothetical protein	Hcp
16	Bacsa_1080	1231652..1232116 [+], 465	325298224	GPW/gp25 family protein	TssE
17	Bacsa_1081	1232125..1233969 [+], 1845	325298225	hypothetical protein	TssF
18	Bacsa_1082	1233984..1234862 [+], 879	325298226	hypothetical protein	TssN
19	Bacsa_1083	1234874..1236034 [+], 1161	325298227	hypothetical protein	TssK
20	Bacsa_1084	1236054..1237016 [+], 963	325298228	hypothetical protein	TssG
21	Bacsa_1085	1237038..1237535 [+], 498	325298229	hypothetical protein	TssO
22	Bacsa_1086	1237547..1238056 [+], 510	325298230	hypothetical protein	TssO
23	Bacsa_1087	1238062..1238967 [+], 906	325298231	PKD domain-containing protein	TssP
24	Bacsa_1088	1238974..1241463 [+], 2490	325298232	hypothetical protein
25	Bacsa_1089	1241488..1242528 [+], 1041	325298233	hypothetical protein	Hcp
26	Bacsa_1090	1242540..1243613 [+], 1074	325298234	hypothetical protein
27	Bacsa_1091	1243618..1244502 [+], 885	325298235	hypothetical protein
28	Bacsa_1092	1244515..1244895 [+], 381	325298236	hypothetical protein
29	Bacsa_1093	1244943..1245818 [+], 876	325298237	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A