SecReT6
I. Summary
SecReT6 ID917 insolico
StrainSphingobacterium sp. 21
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015277
Location5746592..5765070
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number211
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Sph21_48295742785..5743435 [-], 651326802187LuxR family transcriptional regulator 
2Sph21_48305743404..5746559 [-], 3156326802188histidine kinase 
3Sph21_48315746592..5747113 [-], 522326802189hypothetical protein  TssO
4Sph21_48325747132..5748289 [-], 1158326802190Hedgehog/intein hint domain-containing protein 
5Sph21_48335748282..5749088 [-], 807326802191hypothetical protein 
6Sph21_48345749092..5750900 [-], 1809326802192Rhs element Vgr protein  VgrG
7Sph21_48355750909..5752060 [-], 1152326802193hypothetical protein  TssK
8Sph21_48365752073..5752969 [-], 897326802194hypothetical protein  TssN
9Sph21_48375753000..5753959 [-], 960326802195hypothetical protein  TssG
10Sph21_48385753956..5755818 [-], 1863326802196hypothetical protein  TssF
11Sph21_48395755815..5756264 [-], 450326802197gpW/GP25 family protein  TssE
12Sph21_48405756369..5756761 [-], 393326802198hypothetical protein  Hcp
13Sph21_48415756850..5758232 [-], 1383326802199hypothetical protein  TssC
14Sph21_48425758249..5758695 [-], 447326802200hypothetical protein  TssB
15Sph21_48435758717..5761203 [-], 2487326802201ATPase AAA  ClpV
16Sph21_48445761205..5763487 [-], 2283326802202hypothetical protein 
17Sph21_48455763615..5764571 [-], 957326802203PKD domain-containing protein  TssP
18Sph21_48465764579..5765070 [-], 492326802204hypothetical protein  TssO
19Sph21_48475765294..5766214 [-], 921326802205AraC family transcriptional regulator 
20Sph21_48485766419..5767309 [+], 891326802206AraC family transcriptional regulator 
21Sph21_48495767323..5767883 [-], 561326802207methyladenine glycosylase 
22Sph21_48505767940..5768875 [-], 936326802208hypothetical protein 
23Sph21_48515768904..5769227 [-], 324326802209hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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