SecReT6
I. Summary
SecReT6 ID918 insolico
StrainLacinutrix sp. 5H-3-7-4
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015638
Location2506854..2544064
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number211111111
ComponentTssOTssPHcp
Number113
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Lacal_22392502445..2504838 [+], 2394336173374protein-disulfide reductase 
2Lacal_22402504951..2506579 [+], 1629336173375adenine deaminase 
3Lacal_22412506854..2509328 [+], 2475336173376ATPase AAA-2 domain-containing protein  ClpV
4Lacal_22422509382..2509828 [+], 447336173377hypothetical protein  TssB
5Lacal_22432509831..2511183 [+], 1353336173378hypothetical protein  TssC
6Lacal_22442511249..2511728 [+], 480336173379hypothetical protein 
7Lacal_22452511734..2512168 [+], 435336173380hypothetical protein 
8Lacal_22462512189..2512839 [-], 651336173381hypothetical protein 
9Lacal_22472512851..2513357 [-], 507336173382hypothetical protein 
10Lacal_22482513562..2514278 [+], 717336173383hypothetical protein 
11Lacal_22492514625..2515182 [-], 558336173384hypothetical protein 
12Lacal_22522515954..2516076 [-], 123336173385hypothetical protein 
13Lacal_22532516320..2516733 [-], 414336173386hypothetical protein 
14Lacal_22542516740..2521227 [-], 4488336173387RHS repeat-associated core domain-containing protein 
15Lacal_22552521258..2521500 [-], 243336173388hypothetical protein 
16Lacal_22562521521..2521784 [-], 264336173389hypothetical protein 
17Lacal_22572521786..2523129 [-], 1344336173390hypothetical protein 
18Lacal_22582523131..2524897 [-], 1767336173391Rhs element Vgr protein  VgrG
19Lacal_22592524918..2525316 [-], 399336173392hypothetical protein  Hcp
20Lacal_22602525420..2525806 [-], 387336173393hypothetical protein  Hcp
21Lacal_22612525959..2526834 [-], 876336173394hypothetical protein  TssN
22Lacal_22622527317..2527802 [-], 486336173395hypothetical protein 
23Lacal_22632527872..2528324 [-], 453336173396hypothetical protein 
24Lacal_22642528356..2529357 [-], 1002336173397hypothetical protein 
25Lacal_22652529363..2531594 [-], 2232336173398peptidase M23 
26Lacal_22662531614..2531982 [-], 369336173399hypothetical protein 
27Lacal_22672531983..2533134 [-], 1152336173400hypothetical protein 
28Lacal_22682533138..2533569 [-], 432336173401hypothetical protein 
29Lacal_22692533566..2534423 [-], 858336173402hypothetical protein 
30Lacal_22702534428..2536233 [-], 1806336173403Rhs element Vgr protein  VgrG
31Lacal_22712536493..2536879 [-], 387336173404hypothetical protein  Hcp
32Lacal_22722536933..2537844 [-], 912336173405hypothetical protein  TssG
33Lacal_22732537845..2538867 [-], 1023336173406NLP/P60 protein 
34Lacal_22742539072..2539506 [+], 435336173407gpW/GP25 family protein  TssE
35Lacal_22752539515..2541344 [+], 1830336173408hypothetical protein  TssF
36Lacal_22762541387..2542382 [+], 996336173409PKD domain-containing protein  TssP
37Lacal_22772542389..2543543 [+], 1155336173410hypothetical protein  TssK
38Lacal_22782543561..2544064 [+], 504336173411hypothetical protein  TssO
39Lacal_22792544176..2545024 [+], 849336173412magnesium chelatase ChlI subunit 
40Lacal_22802545078..2546835 [+], 1758336173413resolvase domain-containing protein 
41Lacal_22812547404..2548744 [+], 1341336173414hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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