SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	918
Strain	Lacinutrix sp. 5H-3-7-4
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_015638
Location	2506854..2544064
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	2	1	1	1	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	1	1	3


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Lacal_2239	2502445..2504838 [+], 2394	336173374	protein-disulfide reductase
2	Lacal_2240	2504951..2506579 [+], 1629	336173375	adenine deaminase
3	Lacal_2241	2506854..2509328 [+], 2475	336173376	ATPase AAA-2 domain-containing protein	ClpV
4	Lacal_2242	2509382..2509828 [+], 447	336173377	hypothetical protein	TssB
5	Lacal_2243	2509831..2511183 [+], 1353	336173378	hypothetical protein	TssC
6	Lacal_2244	2511249..2511728 [+], 480	336173379	hypothetical protein
7	Lacal_2245	2511734..2512168 [+], 435	336173380	hypothetical protein
8	Lacal_2246	2512189..2512839 [-], 651	336173381	hypothetical protein
9	Lacal_2247	2512851..2513357 [-], 507	336173382	hypothetical protein
10	Lacal_2248	2513562..2514278 [+], 717	336173383	hypothetical protein
11	Lacal_2249	2514625..2515182 [-], 558	336173384	hypothetical protein
12	Lacal_2252	2515954..2516076 [-], 123	336173385	hypothetical protein
13	Lacal_2253	2516320..2516733 [-], 414	336173386	hypothetical protein
14	Lacal_2254	2516740..2521227 [-], 4488	336173387	RHS repeat-associated core domain-containing protein
15	Lacal_2255	2521258..2521500 [-], 243	336173388	hypothetical protein
16	Lacal_2256	2521521..2521784 [-], 264	336173389	hypothetical protein
17	Lacal_2257	2521786..2523129 [-], 1344	336173390	hypothetical protein
18	Lacal_2258	2523131..2524897 [-], 1767	336173391	Rhs element Vgr protein	VgrG
19	Lacal_2259	2524918..2525316 [-], 399	336173392	hypothetical protein	Hcp
20	Lacal_2260	2525420..2525806 [-], 387	336173393	hypothetical protein	Hcp
21	Lacal_2261	2525959..2526834 [-], 876	336173394	hypothetical protein	TssN
22	Lacal_2262	2527317..2527802 [-], 486	336173395	hypothetical protein
23	Lacal_2263	2527872..2528324 [-], 453	336173396	hypothetical protein
24	Lacal_2264	2528356..2529357 [-], 1002	336173397	hypothetical protein
25	Lacal_2265	2529363..2531594 [-], 2232	336173398	peptidase M23
26	Lacal_2266	2531614..2531982 [-], 369	336173399	hypothetical protein
27	Lacal_2267	2531983..2533134 [-], 1152	336173400	hypothetical protein
28	Lacal_2268	2533138..2533569 [-], 432	336173401	hypothetical protein
29	Lacal_2269	2533566..2534423 [-], 858	336173402	hypothetical protein
30	Lacal_2270	2534428..2536233 [-], 1806	336173403	Rhs element Vgr protein	VgrG
31	Lacal_2271	2536493..2536879 [-], 387	336173404	hypothetical protein	Hcp
32	Lacal_2272	2536933..2537844 [-], 912	336173405	hypothetical protein	TssG
33	Lacal_2273	2537845..2538867 [-], 1023	336173406	NLP/P60 protein
34	Lacal_2274	2539072..2539506 [+], 435	336173407	gpW/GP25 family protein	TssE
35	Lacal_2275	2539515..2541344 [+], 1830	336173408	hypothetical protein	TssF
36	Lacal_2276	2541387..2542382 [+], 996	336173409	PKD domain-containing protein	TssP
37	Lacal_2277	2542389..2543543 [+], 1155	336173410	hypothetical protein	TssK
38	Lacal_2278	2543561..2544064 [+], 504	336173411	hypothetical protein	TssO
39	Lacal_2279	2544176..2545024 [+], 849	336173412	magnesium chelatase ChlI subunit
40	Lacal_2280	2545078..2546835 [+], 1758	336173413	resolvase domain-containing protein
41	Lacal_2281	2547404..2548744 [+], 1341	336173414	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A