SecReT6
I. Summary
SecReT6 ID920 insolico
StrainZobellia galactanivorans DsiJT
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015844
Location532117..547359
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number112
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1zobellia_387527799..528224 [+], 426340616399hypothetical protein 
2zobellia_388528244..528669 [-], 426340616400hypothetical protein 
3zobellia_389528695..529081 [-], 387340616401hypothetical protein 
4zobellia_390529339..529500 [-], 162340616402hypothetical protein 
5zobellia_391529610..530263 [-], 654340616403hypothetical protein 
6zobellia_392530438..530614 [-], 177340616404hypothetical protein 
7zobellia_393530710..531081 [-], 372340616405hypothetical protein 
8zobellia_394531078..532109 [-], 1032340616406hypothetical protein 
9zobellia_395532117..532506 [-], 390340616407hypothetical protein  Hcp
10zobellia_396532550..533899 [-], 1350340616408hypothetical protein  TssC
11zobellia_397533918..534370 [-], 453340616409hypothetical protein  TssB
12zobellia_398534492..534878 [-], 387340616410hypothetical protein  Hcp
13zobellia_399535250..536284 [-], 1035340616411PKD repeat-containing protein  TssP
14zobellia_400536307..536978 [+], 672340616412peptidase, family C40 
15zobellia_401536979..537884 [+], 906340616413hypothetical protein  TssG
16zobellia_402537891..538757 [+], 867340616414hypothetical protein  TssN
17zobellia_403538768..539910 [+], 1143340616415hypothetical protein  TssK
18zobellia_404539921..540430 [+], 510340616416hypothetical protein  TssO
19zobellia_405 (clpB2)540438..542903 [+], 2466340616417chaperone ClpB  ClpV
20zobellia_406543087..543521 [+], 435340616418hypothetical protein  TssE
21zobellia_407543553..545421 [+], 1869340616419hypothetical protein  TssF
22zobellia_408545524..547359 [+], 1836340616420Vgr family protein  VgrG
23zobellia_409547372..548232 [+], 861340616421hypothetical protein 
24zobellia_410548250..548738 [+], 489340616422hypothetical protein 
25zobellia_411548739..550994 [+], 2256340616423hypothetical protein 
26zobellia_412550998..551618 [+], 621340616424hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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