SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	921
Strain	Flavobacterium branchiophilum FL-15
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016001
Location	3248251..3298936
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	2	1	1	1	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	0	1	3


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	FBFL15_2775	3244430..3246349 [+], 1920	347537577	putative M1 family metalloprotease
2	FBFL15_2776	3246428..3247753 [+], 1326	347537578	putative M50 family membrane-associated zinc metalloprotease
3	FBFL15_2778	3248251..3249618 [-], 1368	347537579	hypothetical protein	TssC
4	FBFL15_2779	3249621..3250088 [-], 468	347537580	hypothetical protein	TssB
5	FBFL15_2780	3250238..3250657 [+], 420	347537581	putative bacteriophage Gp25 protein	TssE
6	FBFL15_2781	3250669..3252423 [+], 1755	347537582	hypothetical protein	TssF
7	FBFL15_2782	3252428..3254872 [+], 2445	347537583	ATPase with chaperone activity ATP-binding subunit	ClpV
8	FBFL15_2783	3254884..3255966 [+], 1083	347537584	hypothetical protein
9	FBFL15_2784	3255972..3256484 [+], 513	347537585	hypothetical protein
10	FBFL15_2787	3259211..3260032 [+], 822	347537586	hypothetical protein
11	FBFL15_2788	3260029..3260763 [+], 735	347537587	hypothetical protein
12	FBFL15_2789	3260777..3261259 [+], 483	347537588	putative twin-arginine translocation pathway signal protein
13	FBFL15_2790	3261249..3261704 [+], 456	347537589	hypothetical protein
14	FBFL15_2791	3261725..3262378 [+], 654	347537590	hypothetical protein
15	FBFL15_2792	3262442..3263107 [+], 666	347537591	hypothetical protein
16	FBFL15_2793	3263143..3263307 [+], 165	347537592	hypothetical protein
17	FBFL15_2794	3263309..3264079 [+], 771	347537593	hypothetical protein
18	FBFL15_2795	3264093..3264824 [+], 732	347537594	hypothetical protein
19	FBFL15_2796	3264894..3265586 [+], 693	347537595	hypothetical protein
20	FBFL15_2797	3265592..3265975 [+], 384	347537596	hypothetical protein
21	FBFL15_2798	3265932..3266837 [+], 906	347537597	hypothetical protein	TssG
22	FBFL15_2799	3266841..3267740 [+], 900	347537598	hypothetical protein	TssN
23	FBFL15_2800	3267772..3268890 [+], 1119	347537599	hypothetical protein
24	FBFL15_2801	3268869..3269474 [+], 606	347537600	hypothetical protein
25	FBFL15_2802	3269478..3270611 [+], 1134	347537601	hypothetical protein	TssK
26	FBFL15_2803	3270619..3271527 [+], 909	347537602	hypothetical protein	Hcp
27	FBFL15_2804	3271542..3272132 [+], 591	347537603	hypothetical protein
28	FBFL15_2805	3272158..3272658 [+], 501	347537604	hypothetical protein
29	FBFL15_2806	3272660..3273130 [+], 471	347537605	hypothetical protein
30	FBFL15_2807	3273120..3274055 [+], 936	347537606	hypothetical protein	TssP
31	FBFL15_2808	3274058..3275947 [+], 1890	347537607	Vgr family protein	VgrG
32	FBFL15_2810	3277477..3278040 [+], 564	347537608	hypothetical protein
33	FBFL15_2812	3278749..3279570 [+], 822	347537609	hypothetical protein
34	FBFL15_2814	3280588..3281214 [+], 627	347537610	hypothetical protein
35	FBFL15_2815	3281227..3282300 [+], 1074	347537611	hypothetical protein
36	FBFL15_2816	3282351..3283070 [+], 720	347537612	hypothetical protein
37	FBFL15_2817	3283603..3285909 [+], 2307	347537613	hypothetical protein
38	FBFL15_2819	3286783..3287265 [+], 483	347537614	hypothetical protein
39	FBFL15_2820	3287608..3288003 [+], 396	347537615	hypothetical protein	Hcp
40	FBFL15_2823	3290217..3291437 [+], 1221	347537616	hypothetical protein
41	FBFL15_2824	3291439..3291732 [+], 294	347537617	hypothetical protein
42	FBFL15_2826	3292148..3292459 [+], 312	347537618	hypothetical protein
43	FBFL15_2827	3292503..3292817 [+], 315	347537619	transposase IS3 family, ORF_A
44	FBFL15_2830	3294058..3294237 [+], 180	347537620	hypothetical protein
45	FBFL15_2831	3294510..3294905 [+], 396	347537621	hypothetical protein	Hcp
46	FBFL15_2833	3295590..3296177 [+], 588	347537622	putative lipoprotein
47	FBFL15_2834	3296295..3297011 [+], 717	347537623	hypothetical protein
48	FBFL15_2835	3297173..3298936 [+], 1764	347537624	Vgr family protein	VgrG
49	FBFL15_2836	3298946..3300295 [+], 1350	347537625	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A