SecReT6
I. Summary
SecReT6 ID921 insolico
StrainFlavobacterium branchiophilum FL-15
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016001
Location3248251..3298936
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number211111111
ComponentTssOTssPHcp
Number013
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FBFL15_27753244430..3246349 [+], 1920347537577putative M1 family metalloprotease 
2FBFL15_27763246428..3247753 [+], 1326347537578putative M50 family membrane-associated zinc metalloprotease 
3FBFL15_27783248251..3249618 [-], 1368347537579hypothetical protein  TssC
4FBFL15_27793249621..3250088 [-], 468347537580hypothetical protein  TssB
5FBFL15_27803250238..3250657 [+], 420347537581putative bacteriophage Gp25 protein  TssE
6FBFL15_27813250669..3252423 [+], 1755347537582hypothetical protein  TssF
7FBFL15_27823252428..3254872 [+], 2445347537583ATPase with chaperone activity ATP-binding subunit  ClpV
8FBFL15_27833254884..3255966 [+], 1083347537584hypothetical protein 
9FBFL15_27843255972..3256484 [+], 513347537585hypothetical protein 
10FBFL15_27873259211..3260032 [+], 822347537586hypothetical protein 
11FBFL15_27883260029..3260763 [+], 735347537587hypothetical protein 
12FBFL15_27893260777..3261259 [+], 483347537588putative twin-arginine translocation pathway signal protein 
13FBFL15_27903261249..3261704 [+], 456347537589hypothetical protein 
14FBFL15_27913261725..3262378 [+], 654347537590hypothetical protein 
15FBFL15_27923262442..3263107 [+], 666347537591hypothetical protein 
16FBFL15_27933263143..3263307 [+], 165347537592hypothetical protein 
17FBFL15_27943263309..3264079 [+], 771347537593hypothetical protein 
18FBFL15_27953264093..3264824 [+], 732347537594hypothetical protein 
19FBFL15_27963264894..3265586 [+], 693347537595hypothetical protein 
20FBFL15_27973265592..3265975 [+], 384347537596hypothetical protein 
21FBFL15_27983265932..3266837 [+], 906347537597hypothetical protein  TssG
22FBFL15_27993266841..3267740 [+], 900347537598hypothetical protein  TssN
23FBFL15_28003267772..3268890 [+], 1119347537599hypothetical protein 
24FBFL15_28013268869..3269474 [+], 606347537600hypothetical protein 
25FBFL15_28023269478..3270611 [+], 1134347537601hypothetical protein  TssK
26FBFL15_28033270619..3271527 [+], 909347537602hypothetical protein  Hcp
27FBFL15_28043271542..3272132 [+], 591347537603hypothetical protein 
28FBFL15_28053272158..3272658 [+], 501347537604hypothetical protein 
29FBFL15_28063272660..3273130 [+], 471347537605hypothetical protein 
30FBFL15_28073273120..3274055 [+], 936347537606hypothetical protein  TssP
31FBFL15_28083274058..3275947 [+], 1890347537607Vgr family protein  VgrG
32FBFL15_28103277477..3278040 [+], 564347537608hypothetical protein 
33FBFL15_28123278749..3279570 [+], 822347537609hypothetical protein 
34FBFL15_28143280588..3281214 [+], 627347537610hypothetical protein 
35FBFL15_28153281227..3282300 [+], 1074347537611hypothetical protein 
36FBFL15_28163282351..3283070 [+], 720347537612hypothetical protein 
37FBFL15_28173283603..3285909 [+], 2307347537613hypothetical protein 
38FBFL15_28193286783..3287265 [+], 483347537614hypothetical protein 
39FBFL15_28203287608..3288003 [+], 396347537615hypothetical protein  Hcp
40FBFL15_28233290217..3291437 [+], 1221347537616hypothetical protein 
41FBFL15_28243291439..3291732 [+], 294347537617hypothetical protein 
42FBFL15_28263292148..3292459 [+], 312347537618hypothetical protein 
43FBFL15_28273292503..3292817 [+], 315347537619transposase IS3 family, ORF_A 
44FBFL15_28303294058..3294237 [+], 180347537620hypothetical protein 
45FBFL15_28313294510..3294905 [+], 396347537621hypothetical protein  Hcp
46FBFL15_28333295590..3296177 [+], 588347537622putative lipoprotein 
47FBFL15_28343296295..3297011 [+], 717347537623hypothetical protein 
48FBFL15_28353297173..3298936 [+], 1764347537624Vgr family protein  VgrG
49FBFL15_28363298946..3300295 [+], 1350347537625hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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