I. Summary

SecReT6 ID	922
Strain	Flavobacterium columnare ATCC 49512
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016510
Location	2278454..2291926
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	0	1	1	1	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	1	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	FCOL_09690	2273880..2276744 [-], 2865	365960973	hypothetical protein	TagL
2	FCOL_09695	2276748..2277257 [-], 510	365960974	hypothetical protein
3	FCOL_09700	2277279..2278445 [-], 1167	365960975	hypothetical protein
4	FCOL_09705	2278454..2280280 [-], 1827	365960976	hypothetical protein	TssF
5	FCOL_09710	2280312..2280743 [-], 432	365960977	GPW/gp25 family protein	TssE
6	FCOL_09715	2280746..2281438 [-], 693	365960978	hypothetical protein
7	FCOL_09720	2281438..2281923 [-], 486	365960979	hypothetical protein
8	FCOL_09725	2281977..2282492 [-], 516	365960980	hypothetical protein	TssO
9	FCOL_09730	2282496..2283653 [-], 1158	365960981	hypothetical protein	TssK
10	FCOL_09735	2283842..2285206 [-], 1365	365960982	hypothetical protein	TssC
11	FCOL_09740	2285218..2285667 [-], 450	365960983	hypothetical protein	TssB
12	FCOL_09745	2285681..2288149 [-], 2469	365960984	ATPase	ClpV
13	FCOL_09750	2288183..2289253 [-], 1071	365960985	PKD domain-containing protein	TssP
14	FCOL_09755	2289234..2289980 [+], 747	365960986	NLP/P60 protein
15	FCOL_09760	2289986..2290918 [+], 933	365960987	hypothetical protein	TssG
16	FCOL_09765	2291006..2291926 [+], 921	365960988	hypothetical protein	TssN
17	FCOL_09770	2291931..2292977 [+], 1047	365960989	hypothetical protein
18	FCOL_09775	2292998..2293480 [+], 483	365960990	hypothetical protein
19	FCOL_09780	2293491..2295833 [+], 2343	365960991	hypothetical protein
20	FCOL_09785	2295805..2296869 [+], 1065	365960992	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A