SecReT6
I. Summary
SecReT6 ID922 insolico
StrainFlavobacterium columnare ATCC 49512
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016510
Location2278454..2291926
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number011111111
ComponentTssOTssPHcp
Number110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FCOL_096902273880..2276744 [-], 2865365960973hypothetical protein  TagL
2FCOL_096952276748..2277257 [-], 510365960974hypothetical protein 
3FCOL_097002277279..2278445 [-], 1167365960975hypothetical protein 
4FCOL_097052278454..2280280 [-], 1827365960976hypothetical protein  TssF
5FCOL_097102280312..2280743 [-], 432365960977GPW/gp25 family protein  TssE
6FCOL_097152280746..2281438 [-], 693365960978hypothetical protein 
7FCOL_097202281438..2281923 [-], 486365960979hypothetical protein 
8FCOL_097252281977..2282492 [-], 516365960980hypothetical protein  TssO
9FCOL_097302282496..2283653 [-], 1158365960981hypothetical protein  TssK
10FCOL_097352283842..2285206 [-], 1365365960982hypothetical protein  TssC
11FCOL_097402285218..2285667 [-], 450365960983hypothetical protein  TssB
12FCOL_097452285681..2288149 [-], 2469365960984ATPase  ClpV
13FCOL_097502288183..2289253 [-], 1071365960985PKD domain-containing protein  TssP
14FCOL_097552289234..2289980 [+], 747365960986NLP/P60 protein 
15FCOL_097602289986..2290918 [+], 933365960987hypothetical protein  TssG
16FCOL_097652291006..2291926 [+], 921365960988hypothetical protein  TssN
17FCOL_097702291931..2292977 [+], 1047365960989hypothetical protein 
18FCOL_097752292998..2293480 [+], 483365960990hypothetical protein 
19FCOL_097802293491..2295833 [+], 2343365960991hypothetical protein 
20FCOL_097852295805..2296869 [+], 1065365960992hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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